View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3158_low_3 (Length: 506)
Name: NF3158_low_3
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 3731607 - 3731194
Alignment:
| Q |
1 |
gaatgtctaatttctcaaagcctgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731607 |
gaatgtctaatttctcaaagcctgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctc |
3731508 |
T |
|
| Q |
101 |
atgagcagatgatttggatatatgtgacatgactgctattttaatgtgtgattaagttagattatttgataatatgacaatggttatatagttttcaaag |
200 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731507 |
atgagcagatgatttggatatatgtgacatgaatgctatt--aatgtgtgattaagttagattatttgataatatgacaatggttatatagttttcaaag |
3731410 |
T |
|
| Q |
201 |
tttacaacaataataacataaaaagttaaagacgaattcttaaatttttattgtagtagtttccctattgaagttgattaaagttcatctannnnnnnnn |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731409 |
tttacaacaataataacataaaaagttaaagacgaattcttaaatttttattgtagtagtttccctattgaagttgattaaagttcatctattttttttt |
3731310 |
T |
|
| Q |
301 |
nngcagactctaaataaactctttattattaatgctggttctggctttaagatgttgtggaaagcagtgaaggcattcctaagtgaacgcacagtagcaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3731309 |
ttgcagactctaaataaactctttattattaatgctggttctggctttaagatgttgtggaaagcagtgaaggcattcctaagtgaacgcacagtagcaa |
3731210 |
T |
|
| Q |
401 |
aaattcaagtacggat |
416 |
Q |
| |
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|||||||||||||||| |
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| T |
3731209 |
aaattcaagtacggat |
3731194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 455 - 489
Target Start/End: Complemental strand, 3731196 - 3731162
Alignment:
| Q |
455 |
gattttatacaactattactatattttgttgtatc |
489 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
3731196 |
gattttatacaactattactatattttgttgtatc |
3731162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 106; Significance: 8e-53; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 122
Target Start/End: Complemental strand, 11683921 - 11683800
Alignment:
| Q |
1 |
gaatgtctaatttctcaaagcctgcaaggtacatcttcatggaaattcagaagattgatagcagttattatcctgaggtactttttgttgatcatagctc |
100 |
Q |
| |
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||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
11683921 |
gaatgtctaatttctcagagcctgcaaggtaaatcttcatggaaattcagaagattgatagcaattattatcctgaggtactttttgttgatcatagctc |
11683822 |
T |
|
| Q |
101 |
atgagcagatgatttggatata |
122 |
Q |
| |
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||||||||||||||||| |||| |
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|
| T |
11683821 |
atgagcagatgatttggttata |
11683800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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