View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3158_low_7 (Length: 363)
Name: NF3158_low_7
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 11 - 348
Target Start/End: Complemental strand, 43961586 - 43961248
Alignment:
| Q |
11 |
caaaggcaagaaatatacatcatcctgctgaaagaagtttcttgatgagaaaaaataataccttccaaggaagataaatgaaattatccatagaattaag |
110 |
Q |
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| T |
43961586 |
caaaggcaagaaatatacatcatcctgctgaaagaagtttcttgatgagaaaaaataataccttccaaggaagataaatgaaattatccatagaattaag |
43961487 |
T |
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| Q |
111 |
ctgatccaattagcttccttgtgagcaacccatgcctaatgtgataaacaaccatatgtcagaaacaaaaatcgcaaaaatagtgaagaagattatagag |
210 |
Q |
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| T |
43961486 |
ctgatccaattagcttccttgtgagcaacccatgcctaatgtgataaacaaccatatgtcagaaacaaaaatcacaaaaatagtgaagaagattatagag |
43961387 |
T |
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| Q |
211 |
agttaagtagttggttaacttacacttaaaatgataacgttgatataaaaatcagtcaaagttgctaccatccacctgagtcggatgaaaaataatacta |
310 |
Q |
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| T |
43961386 |
agttaagtagttggttaacttacacttaaaatgataacgttgatataaaaatcagtcaaagttgctaccatccacctgagtcggatgaaaaataatacta |
43961287 |
T |
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| Q |
311 |
agtactacattgttttctgttaa-aaaacaagtgtcttg |
348 |
Q |
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| T |
43961286 |
agtactacattgttttctgttaaaaaaacaagtgtcttg |
43961248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Complemental strand, 43954740 - 43954670
Alignment:
| Q |
62 |
aaaataataccttccaaggaagataaatgaaattatccatagaattaagctgatccaattagcttccttgt |
132 |
Q |
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| T |
43954740 |
aaaacaataccttccaaggccgataagtaaaattatccatagaatcgagctgatccaattagcttccttgt |
43954670 |
T |
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