View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3158_low_8 (Length: 362)
Name: NF3158_low_8
Description: NF3158
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3158_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 129; Significance: 1e-66; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 27390878 - 27390719
Alignment:
| Q |
18 |
ataggagaaaaaaggtgtttgagggtatttgaagcaagcaacatggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaatt |
117 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
27390878 |
ataggggaaaaaaggtgtttgagggtatttgaagcaagcaacgtggaggcatcatttggcct-aaaccaacatatccttgtcacctatgggcaataaatt |
27390780 |
T |
|
| Q |
118 |
cttcccacgaggcatcaatgtgtcctgatctacactcttaatttttgagtaaggtacatac |
178 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
27390779 |
cttcccacgaggcatcaatgtgttctgatctacactcttaatttttgagtaagttacatac |
27390719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 17 - 170
Target Start/End: Complemental strand, 27384390 - 27384237
Alignment:
| Q |
17 |
cataggagaaaaaa-ggtgtttgagggtatttgaagcaagcaacatggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaa |
115 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27384390 |
cataggagaaaaaaaggtgtttgagggtatttgaagcaagcaacgtggaggcatcatttgaccttaaacaaacatatccttgtcacctatgggcaataaa |
27384291 |
T |
|
| Q |
116 |
ttcttcccacgaggcatcaatgtgtcctgatctacactcttaatttttgagtaag |
170 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |
|
|
| T |
27384290 |
ttcttcccacgaggcatcaatgtgttctgatctacact-ttaaattttgagtaag |
27384237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 267 - 343
Target Start/End: Complemental strand, 27384130 - 27384054
Alignment:
| Q |
267 |
tattttaaattcttgtagtattccatacaaaagaaattattgtactcgtgctataatatcgtttttaaagagttgct |
343 |
Q |
| |
|
|||| |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
27384130 |
tattataaattcttgtagtatcccatacaaaagaaattattgtacccgtgctataatatcgtttttaaagagttgct |
27384054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University