View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3160_high_10 (Length: 295)
Name: NF3160_high_10
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3160_high_10 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 17 - 282
Target Start/End: Complemental strand, 25793625 - 25793360
Alignment:
| Q |
17 |
cagcagaaagattcatacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactcc |
116 |
Q |
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| T |
25793625 |
cagcagaaagattcatacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactcc |
25793526 |
T |
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| Q |
117 |
ctccgtatcatgattttgaaggactgcaagttactaaattttcggccgtttcaagaaactctataatannnnnnngttcctagtggtcagattatgtatg |
216 |
Q |
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| T |
25793525 |
ctccatctcatgatttggaaggactgcaagttactaaattttcggccatttcaagaaactctttaatatttttttgttcctagtggtcagattatgtatg |
25793426 |
T |
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| Q |
217 |
aaaaatgataaatttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactccttt |
282 |
Q |
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| T |
25793425 |
aaaaatgataaatttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactccttt |
25793360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 84952 - 84900
Alignment:
| Q |
230 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactccttt |
282 |
Q |
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| T |
84952 |
ttaccaattgcttcaaccagcctcagaaccatctttccagtgtgaactccttt |
84900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 10136539 - 10136487
Alignment:
| Q |
230 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactccttt |
282 |
Q |
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| T |
10136539 |
ttaccaattgcttcaaccaggcgtagaaccatctttccggtgtgaactccttt |
10136487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 10213001 - 10212949
Alignment:
| Q |
230 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactccttt |
282 |
Q |
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| T |
10213001 |
ttaccaattgcttcgaccagaggcagaaccatctttccggagtgaactccttt |
10212949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 282
Target Start/End: Original strand, 10365757 - 10365810
Alignment:
| Q |
229 |
tttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactccttt |
282 |
Q |
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| T |
10365757 |
tttaccaactgcttcaaccaggcgtagaaccatctttccggtgtgaactccttt |
10365810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 230 - 282
Target Start/End: Complemental strand, 10133918 - 10133866
Alignment:
| Q |
230 |
ttaccaattgcttcaactagaagcagaaccatctttccagtgtgaactccttt |
282 |
Q |
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|||||||||||||| || ||| ||| |||||| ||||| |||||||||||||| |
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| T |
10133918 |
ttaccaattgcttcgaccagacgcaaaaccatatttccggtgtgaactccttt |
10133866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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