View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3160_high_12 (Length: 259)

Name: NF3160_high_12
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3160_high_12
NF3160_high_12
[»] chr1 (13 HSPs)
chr1 (15-250)||(8106166-8106396)
chr1 (132-200)||(33202898-33202967)
chr1 (137-200)||(19637768-19637832)
chr1 (137-200)||(7988446-7988510)
chr1 (140-203)||(10536527-10536591)
chr1 (130-200)||(29415741-29415811)
chr1 (138-192)||(42325561-42325616)
chr1 (144-194)||(18490457-18490507)
chr1 (138-194)||(6427351-6427408)
chr1 (137-194)||(44296496-44296553)
chr1 (137-212)||(11412751-11412827)
chr1 (145-200)||(13436466-13436522)
chr1 (138-193)||(37318414-37318469)
[»] chr7 (10 HSPs)
chr7 (129-187)||(38134414-38134473)
chr7 (129-200)||(4909143-4909215)
chr7 (137-194)||(2525845-2525903)
chr7 (148-201)||(10893863-10893917)
chr7 (138-187)||(12278836-12278886)
chr7 (144-193)||(36314629-36314679)
chr7 (143-195)||(21247736-21247789)
chr7 (136-191)||(8160415-8160471)
chr7 (139-194)||(31808510-31808566)
chr7 (128-160)||(31924417-31924449)
[»] scaffold0022 (1 HSPs)
scaffold0022 (129-194)||(99885-99951)
[»] chr5 (6 HSPs)
chr5 (137-194)||(28296328-28296386)
chr5 (129-193)||(38749565-38749630)
chr5 (128-170)||(36611450-36611492)
chr5 (137-185)||(2577190-2577239)
chr5 (137-193)||(15410450-15410507)
chr5 (136-188)||(19293430-19293483)
[»] chr3 (4 HSPs)
chr3 (143-200)||(20691325-20691383)
chr3 (142-199)||(40150567-40150625)
chr3 (129-193)||(13799496-13799561)
chr3 (129-193)||(21478675-21478740)
[»] chr4 (9 HSPs)
chr4 (137-187)||(18513249-18513300)
chr4 (144-194)||(17734979-17735029)
chr4 (129-187)||(5654599-5654658)
chr4 (137-187)||(14465302-14465353)
chr4 (137-199)||(56049877-56049939)
chr4 (129-194)||(40783949-40784015)
chr4 (137-189)||(20743284-20743337)
chr4 (145-201)||(33950144-33950201)
chr4 (136-200)||(44362665-44362730)
[»] chr2 (9 HSPs)
chr2 (140-194)||(31026698-31026753)
chr2 (138-187)||(18570973-18571023)
chr2 (136-187)||(4229416-4229468)
chr2 (137-187)||(10535767-10535818)
chr2 (138-172)||(16630796-16630830)
chr2 (137-201)||(30298443-30298506)
chr2 (149-194)||(24980537-24980582)
chr2 (137-187)||(37402092-37402144)
chr2 (135-194)||(45000847-45000906)
[»] chr8 (6 HSPs)
chr8 (138-195)||(33382019-33382077)
chr8 (143-192)||(3508058-3508108)
chr8 (136-193)||(11803258-11803316)
chr8 (137-189)||(9936814-9936867)
chr8 (129-193)||(12570736-12570801)
chr8 (137-200)||(12985392-12985456)
[»] scaffold0011 (1 HSPs)
scaffold0011 (129-195)||(240021-240088)
[»] chr6 (6 HSPs)
chr6 (136-194)||(32511667-32511726)
chr6 (134-194)||(14721238-14721299)
chr6 (137-197)||(18612621-18612682)
chr6 (137-200)||(9658879-9658943)
chr6 (137-200)||(32728367-32728431)
chr6 (136-187)||(34446564-34446616)


Alignment Details
Target: chr1 (Bit Score: 176; Significance: 7e-95; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 15 - 250
Target Start/End: Complemental strand, 8106396 - 8106166
Alignment:
Q  15 aaaatgattgctaactaattaata---gataacaaaacatcaactaactaactaatttatgaactaattatagcccccctcaagttagagagtactaaat 111  Q
    ||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  8106396 aaaatgattgctaactaattaataatagataacaaaacatcaactaactaactaatttatgaactaattatagcccccctcaaattagagagtactaaat 8106297  T
Q  112 acagagacatggactatgacatgttgacaccgataataatttaagaaaaagacataattcatgtaatcatatgtgttggtgtcagacaccgaaatgtgtc 211  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||        | | ||||||||||||||||||||||||||||||    
T  8106296 acagagacatggactatgacatgttgataccgataataatttaagaaaaagacataat--------ttacatgtgttggtgtcagacaccgaaatgtgtc 8106205  T
Q  212 caataccggaacacgtctactacaataaagaccctatgc 250  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  8106204 caataacggaacacgtctactacaataaagaccctatgc 8106166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 33202898 - 33202967
Alignment:
Q  132 atgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacac 200  Q
    |||||||||||||||||||||| | |||| ||||||| || |||||||||||||| ||||||||||||||    
T  33202898 atgttgacaccgataataattttaaaaaatgacataaatcaatgtaatcatatgttttggtgtcagacac 33202967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 19637768 - 19637832
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacac 200  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||||||||| |||||| |||||    
T  19637768 gacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtcggtgtcggacac 19637832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 137 - 200
Target Start/End: Complemental strand, 7988510 - 7988446
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacac 200  Q
    ||||| |||||||||||||||||  |||||||||| ||||||||||| ||||||||||| |||||    
T  7988510 gacactgataataatttaagaaagtgacataattcaatgtaatcataagtgttggtgtcggacac 7988446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Complemental strand, 10536591 - 10536527
Alignment:
Q  140 accgataataatttaagaaaaagacataattcat-gtaatcatatgtgttggtgtcagacaccga 203  Q
    ||||||||||||||||||| || ||||| ||||  | |||||||||||| |||||||||||||||    
T  10536591 accgataataatttaagaacaaaacatagttcaacgcaatcatatgtgtcggtgtcagacaccga 10536527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 130 - 200
Target Start/End: Original strand, 29415741 - 29415811
Alignment:
Q  130 acatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 200  Q
    ||||||||| || |||||||||||||||||| |||||||||||   |||||| ||||||| |||||||||||    
T  29415741 acatgttgaaactgataataatttaagaaaatgacataattcagcataatcacatgtgtt-gtgtcagacac 29415811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 138 - 192
Target Start/End: Original strand, 42325561 - 42325616
Alignment:
Q  138 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtg 192  Q
    |||||||||||||||| |||||| ||||||||||| |||||  |||||||||||||    
T  42325561 acaccgataataatttgagaaaatgacataattcagtgtaacaatatgtgttggtg 42325616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 18490457 - 18490507
Alignment:
Q  144 ataataatttaagaaaaagacataattcatgtaatcatatgtgttggtgtc 194  Q
    |||| ||||| | |||| |||||||||||||||||||||||| ||||||||    
T  18490457 ataacaattttaaaaaatgacataattcatgtaatcatatgtcttggtgtc 18490507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 138 - 194
Target Start/End: Original strand, 6427351 - 6427408
Alignment:
Q  138 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 194  Q
    |||||| ||||||||| ||||||  |||||||||| |||||| |||||||||||||||    
T  6427351 acaccgctaataatttgagaaaatcacataattcaatgtaattatatgtgttggtgtc 6427408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 44296553 - 44296496
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattcatgtaatcatatgtgttggtgtc 194  Q
    ||||||| ||||||||| |||||| ||||||||| |  ||||||||||||| ||||||    
T  44296553 gacaccggtaataatttgagaaaatgacataatttagttaatcatatgtgtcggtgtc 44296496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 212
Target Start/End: Complemental strand, 11412827 - 11412751
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacaccgaaatgtgtcc 212  Q
    ||||||||||||||| | |||||| |||||||||| |||| |||||| |||| |||||  |||||| | ||||||||    
T  11412827 gacaccgataataatatgagaaaatgacataattcaatgtgatcataggtgtcggtgttggacaccaacatgtgtcc 11412751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 200
Target Start/End: Original strand, 13436466 - 13436522
Alignment:
Q  145 taataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 200  Q
    |||||||||||| |||  |||||||||| |||||| ||||||||||||||| |||||    
T  13436466 taataatttaaggaaatcacataattcagtgtaattatatgtgttggtgtcggacac 13436522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 138 - 193
Target Start/End: Original strand, 37318414 - 37318469
Alignment:
Q  138 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 193  Q
    |||| ||||||||||||| |||| ||| ||||||| |||||||||||||||||||||    
T  37318414 acactgataataatttaa-aaaaggacgtaattcaatgtaatcatatgtgttggtgt 37318469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 38134473 - 38134414
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 187  Q
    ||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  38134473 gacatgttgacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 38134414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 200
Target Start/End: Original strand, 4909143 - 4909215
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 200  Q
    |||| ||||||||| |||||||||| ||||||  |||||||||| |||||||||||||||  ||||| |||||    
T  4909143 gacaggttgacaccaataataatttgagaaaattacataattcattgtaatcatatgtgtcagtgtcggacac 4909215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 2525903 - 2525845
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtc 194  Q
    ||||||||||||||||| || ||| |||||||||| || ||||||||||||| ||||||    
T  2525903 gacaccgataataatttgagcaaatgacataattcaatataatcatatgtgtcggtgtc 2525845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 201
Target Start/End: Complemental strand, 10893917 - 10893863
Alignment:
Q  148 taatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacacc 201  Q
    ||||||||||||| ||||||||| | |||||||| ||||||||||||| ||||||    
T  10893917 taatttaagaaaatgacataattgaatgtaatcacatgtgttggtgtctgacacc 10893863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 12278836 - 12278886
Alignment:
Q  138 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgt 187  Q
    |||| |||||||||||||||||| ||||||||||| |||||| ||||||||    
T  12278836 acactgataataatttaagaaaatgacataattcagtgtaattatatgtgt 12278886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 36314679 - 36314629
Alignment:
Q  144 ataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 193  Q
    |||||||||| |||||| |||||| |||| |||||||||||||||||||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgtgttggtgt 36314629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 143 - 195
Target Start/End: Complemental strand, 21247789 - 21247736
Alignment:
Q  143 gataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtca 195  Q
    ||||||||||| |||||| ||| ||||||| ||||||||| |||||||||||||    
T  21247789 gataataatttgagaaaatgacgtaattcaatgtaatcatgtgtgttggtgtca 21247736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 8160415 - 8160471
Alignment:
Q  136 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggt 191  Q
    |||||||| ||||||||||||||||  |||||||| | |||||| ||||||||||||    
T  8160415 tgacaccgctaataatttaagaaaattacataatttagtgtaattatatgtgttggt 8160471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 194
Target Start/End: Complemental strand, 31808566 - 31808510
Alignment:
Q  139 caccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 194  Q
    ||||||||||||||| |||||| |||| || ||| |||||||| |||||||||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgttggtgtc 31808510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 160
Target Start/End: Original strand, 31924417 - 31924449
Alignment:
Q  128 tgacatgttgacaccgataataatttaagaaaa 160  Q
    ||||| |||||||||||||||||||||||||||    
T  31924417 tgacacgttgacaccgataataatttaagaaaa 31924449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 99885 - 99951
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtc 194  Q
    ||||||| ||||||||||||||||| ||||||  ||||||||| ||||||| |||||||||||||||    
T  99885 gacatgtcgacaccgataataattttagaaaataacataattcaatgtaattatatgtgttggtgtc 99951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 137 - 194
Target Start/End: Original strand, 28296328 - 28296386
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtc 194  Q
    ||||||||||||||||| |||||| |||||||||| ||||| |||||||||||||||||    
T  28296328 gacaccgataataatttgagaaaatgacataattcaatgtactcatatgtgttggtgtc 28296386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 38749630 - 38749565
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgt 193  Q
    ||||||| ||||||||||||||||| | |||| |||||||||| ||||||| ||||||||||||||    
T  38749630 gacatgtcgacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgt 38749565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 170
Target Start/End: Original strand, 36611450 - 36611492
Alignment:
Q  128 tgacatgttgacaccgataataatttaagaaaaagacataatt 170  Q
    ||||||||||||||||||| || |||||||||| |||||||||    
T  36611450 tgacatgttgacaccgatagtagtttaagaaaatgacataatt 36611492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 185
Target Start/End: Complemental strand, 2577239 - 2577190
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgt 185  Q
    ||||||||||||||||| |||||| ||||||||| | |||||||||||||    
T  2577239 gacaccgataataatttgagaaaatgacataatttagtgtaatcatatgt 2577190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 193
Target Start/End: Complemental strand, 15410507 - 15410450
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 193  Q
    ||||||| ||||||||||||||||  | || ||||| |||||||||||||||||||||    
T  15410507 gacaccgctaataatttaagaaaattatatgattcagtgtaatcatatgtgttggtgt 15410450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 188
Target Start/End: Complemental strand, 19293483 - 19293430
Alignment:
Q  136 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgtt 188  Q
    ||||||| |||||||||||||||||  |||||||| | ||||||||||||||||    
T  19293483 tgacaccaataataatttaagaaaataacataattaagtgtaatcatatgtgtt 19293430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 20691325 - 20691383
Alignment:
Q  143 gataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 200  Q
    ||||||||||| |||||| ||||||||||| ||||||||||||||| ||||||||||||    
T  20691325 gataataatttgagaaaatgacataattcagtgtaatcatatgtgtcggtgtcagacac 20691383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 199
Target Start/End: Complemental strand, 40150625 - 40150567
Alignment:
Q  142 cgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagaca 199  Q
    |||||||||||| |||||| || |||||||| ||||||||||||||| |||||| ||||    
T  40150625 cgataataatttgagaaaatgatataattcaatgtaatcatatgtgtcggtgtctgaca 40150567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 13799496 - 13799561
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 193  Q
    |||| |||||||||||||||| ||| |||||| ||||||||| | |||||| |||||||| |||||    
T  13799496 gacacgttgacaccgataatagtttgagaaaatgacataattaagtgtaataatatgtgtcggtgt 13799561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 21478675 - 21478740
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 193  Q
    ||||||| |||||| |||||||||| | || | ||||||| ||| |||||||||||||||||||||    
T  21478675 gacatgtcgacaccaataataatttcacaagatgacataaatcaatgtaatcatatgtgttggtgt 21478740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 18513300 - 18513249
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 187  Q
    ||||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  18513300 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18513249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 17734979 - 17735029
Alignment:
Q  144 ataataatttaagaaaaagacataattcatgtaatcatatgtgttggtgtc 194  Q
    |||| ||||||| |||| |||||||||||||||||||||||||| ||||||    
T  17734979 ataacaatttaaaaaaatgacataattcatgtaatcatatgtgtcggtgtc 17735029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 187
Target Start/End: Complemental strand, 5654658 - 5654599
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 187  Q
    ||||||| ||||| ||||||||||| |||||| |||||||||| ||||||||||| ||||    
T  5654658 gacatgtcgacactgataataatttgagaaaatgacataattcaatgtaatcatacgtgt 5654599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 14465353 - 14465302
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 187  Q
    ||||||||||||||||| |||||| |||||||||| || |||||||||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgt 14465302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 199
Target Start/End: Original strand, 56049877 - 56049939
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagaca 199  Q
    ||||||||||||||||| |||||  |||||| |||| ||||||||||||||| |||||||||||    
T  56049877 gacaccgataataatttgagaaat-gacatagttcaatgtaatcatatgtgtcggtgtcagaca 56049939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 40783949 - 40784015
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattcat-gtaatcatatgtgttggtgtc 194  Q
    ||||||| ||| ||||||||||||| ||| ||  ||||||||||  |||||||||||||||||||||    
T  40783949 gacatgtcgacgccgataataatttgagataataacataattcagcgtaatcatatgtgttggtgtc 40784015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 189
Target Start/End: Complemental strand, 20743337 - 20743284
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttg 189  Q
    ||||| ||||||||||| |||||| ||||||||||| |||||||||| ||||||    
T  20743337 gacacggataataatttgagaaaatgacataattcagtgtaatcataggtgttg 20743284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 145 - 201
Target Start/End: Original strand, 33950144 - 33950201
Alignment:
Q  145 taataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacacc 201  Q
    ||||||||| ||||||  |||||||| | ||||||||||||||| |||||||||||||    
T  33950144 taataatttgagaaaatcacataatttaatgtaatcatatgtgtcggtgtcagacacc 33950201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 136 - 200
Target Start/End: Original strand, 44362665 - 44362730
Alignment:
Q  136 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 200  Q
    |||||||||||| | ||| |||||| ||||||||| | |||||||| | |||||||||||||||||    
T  44362665 tgacaccgataaaattttgagaaaatgacataatttaatgtaatcacaagtgttggtgtcagacac 44362730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 194
Target Start/End: Original strand, 31026698 - 31026753
Alignment:
Q  140 accgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtc 194  Q
    ||||||||||||||||||||| |||||||||| |||||||||||| ||| ||||||    
T  31026698 accgataataatttaagaaaatgacataattcaatgtaatcatatatgtcggtgtc 31026753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 187
Target Start/End: Original strand, 18570973 - 18571023
Alignment:
Q  138 acaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgt 187  Q
    |||||||||||||||| |||||| |||||||||| ||||||||||||||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgt 18571023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 187
Target Start/End: Complemental strand, 4229468 - 4229416
Alignment:
Q  136 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgt 187  Q
    ||||||| |||||||||||||| || ||||||||||| |||||||||||||||    
T  4229468 tgacaccaataataatttaagagaatgacataattcagtgtaatcatatgtgt 4229416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 10535818 - 10535767
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgt 187  Q
    ||||||||||||||||| |||||| ||||||||||| |||||||||| ||||    
T  10535818 gacaccgataataatttgagaaaatgacataattcagtgtaatcataagtgt 10535767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 172
Target Start/End: Original strand, 16630796 - 16630830
Alignment:
Q  138 acaccgataataatttaagaaaaagacataattca 172  Q
    ||||||||||||||||||||||| |||||||||||    
T  16630796 acaccgataataatttaagaaaatgacataattca 16630830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 30298506 - 30298443
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacacc 201  Q
    ||||||||||||||||||| |||| ||||||||||| |||||||  |||||| |||||| ||||||    
T  30298506 gacaccgataataatttaataaaatgacataattcagtgtaatc--atgtgtcggtgtcggacacc 30298443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 24980537 - 24980582
Alignment:
Q  149 aatttaagaaaaagacataattcatgtaatcatatgtgttggtgtc 194  Q
    |||||||||||| |  |||||||||||||||||| |||||||||||    
T  24980537 aatttaagaaaatgttataattcatgtaatcataggtgttggtgtc 24980582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 187
Target Start/End: Complemental strand, 37402144 - 37402092
Alignment:
Q  137 gacaccgataataatttaagaaaaa-gacataattca-tgtaatcatatgtgt 187  Q
    ||||||||| ||||||||| ||||| ||||||||||| |||||||||||||||    
T  37402144 gacaccgattataatttaaaaaaaatgacataattcaatgtaatcatatgtgt 37402092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 194
Target Start/End: Complemental strand, 45000906 - 45000847
Alignment:
Q  135 ttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 194  Q
    ||||||||||||| ||||| |||||| |||| |||||| ||||||||||||||| ||||||    
T  45000906 ttgacaccgataa-aatttgagaaaatgacacaattcaatgtaatcatatgtgtcggtgtc 45000847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 195
Target Start/End: Complemental strand, 33382077 - 33382019
Alignment:
Q  138 acaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtca 195  Q
    ||||||||||||||||||||||| |||||||||||  ||||| |||||||| |||||||    
T  33382077 acaccgataataatttaagaaaatgacataattcagagtaattatatgtgtcggtgtca 33382019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 192
Target Start/End: Original strand, 3508058 - 3508108
Alignment:
Q  143 gataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtg 192  Q
    ||||||||||| ||||||  |||||||||| ||||||||||||||||||||    
T  3508058 gataataatttgagaaaataacataattcaatgtaatcatatgtgttggtg 3508108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 193
Target Start/End: Original strand, 11803258 - 11803316
Alignment:
Q  136 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 193  Q
    |||||| | ||||||||||||||||  |||||||||| |||||| ||||||||||||||    
T  11803258 tgacactgttaataatttaagaaaatcacataattcagtgtaattatatgtgttggtgt 11803316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 189
Target Start/End: Original strand, 9936814 - 9936867
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttg 189  Q
    |||| ||||||||||||||||||| || ||||||| || |||||||||||||||    
T  9936814 gacatcgataataatttaagaaaatgatataattcaatataatcatatgtgttg 9936867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 12570801 - 12570736
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgt 193  Q
    |||| |||||||||| |||||||||||||||||  ||||||| | |||||| |||| |||||||||    
T  12570801 gacacgttgacaccgctaataatttaagaaaaacgcataattaagtgtaattatatatgttggtgt 12570736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 12985392 - 12985456
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 200  Q
    |||||| |||||||||| ||||||  |||||||||| ||||||||||| ||| |||||| |||||    
T  12985392 gacacctataataatttgagaaaatcacataattcaatgtaatcatatatgtcggtgtcggacac 12985456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 240088 - 240021
Alignment:
Q  129 gacatgttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtca 195  Q
    |||||||||||| | |||||||||| ||||||  | |||||||| ||||||||||||||| |||||||    
T  240088 gacatgttgacaactataataatttgagaaaataatataattcaatgtaatcatatgtgtcggtgtca 240021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 32511726 - 32511667
Alignment:
Q  136 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 194  Q
    |||||||| ||||||||||||||||  |||||||||| |||||| ||| |||||||||||    
T  32511726 tgacaccgctaataatttaagaaaatcacataattcagtgtaattataagtgttggtgtc 32511667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 134 - 194
Target Start/End: Original strand, 14721238 - 14721299
Alignment:
Q  134 gttgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtc 194  Q
    |||||||||  ||||||||||||||||  |||||||||| | |||| |||||||||||||||    
T  14721238 gttgacaccattaataatttaagaaaattacataattcactataattatatgtgttggtgtc 14721299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 18612621 - 18612682
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcaga 197  Q
    |||| |||||||||||   ||||| | ||||||||| |||||||||||||||||||||||||    
T  18612621 gacatcgataataattcttgaaaatgtcataattcaatgtaatcatatgtgttggtgtcaga 18612682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 9658879 - 9658943
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgttggtgtcagacac 200  Q
    ||||||| ||||||||||||||||  |||||||||| |||||| |||| ||| ||||| ||||||    
T  9658879 gacaccgctaataatttaagaaaatcacataattcagtgtaattatatttgtcggtgttagacac 9658943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 200
Target Start/End: Original strand, 32728367 - 32728431
Alignment:
Q  137 gacaccgataataatttaagaaaaagacataattc-atgtaatcatatgtgttggtgtcagacac 200  Q
    |||||||||||||| ||||||||| |||||||||| ||||||  | ||||||||  |||||||||    
T  32728367 gacaccgataataaattaagaaaatgacataattctatgtaaatacatgtgttgacgtcagacac 32728431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 34446564 - 34446616
Alignment:
Q  136 tgacaccgataataatttaagaaaaagacataattca-tgtaatcatatgtgt 187  Q
    |||||| ||||||||||| |||||| ||||||||||| |||||||||| ||||    
T  34446564 tgacacggataataatttgagaaaatgacataattcagtgtaatcataggtgt 34446616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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