View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3160_high_13 (Length: 236)

Name: NF3160_high_13
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3160_high_13
NF3160_high_13
[»] chr2 (8 HSPs)
chr2 (1-221)||(33360938-33361158)
chr2 (1-116)||(20267161-20267276)
chr2 (1-112)||(20268947-20269058)
chr2 (48-112)||(41282960-41283024)
chr2 (68-112)||(42148680-42148724)
chr2 (13-101)||(41993318-41993406)
chr2 (48-114)||(41983270-41983336)
chr2 (76-112)||(4855372-4855408)
[»] chr1 (9 HSPs)
chr1 (1-113)||(49400244-49400356)
chr1 (2-109)||(49399549-49399656)
chr1 (11-114)||(27890566-27890669)
chr1 (13-112)||(27891256-27891355)
chr1 (48-112)||(1764516-1764580)
chr1 (68-109)||(7338012-7338053)
chr1 (48-112)||(49385085-49385149)
chr1 (76-115)||(7338831-7338870)
chr1 (48-113)||(49385787-49385852)
[»] chr4 (15 HSPs)
chr4 (4-114)||(52238270-52238380)
chr4 (1-112)||(52237635-52237745)
chr4 (2-110)||(53327458-53327566)
chr4 (11-112)||(55633554-55633655)
chr4 (2-106)||(48957414-48957518)
chr4 (48-112)||(5469968-5470032)
chr4 (48-114)||(36386039-36386105)
chr4 (8-112)||(53320685-53320792)
chr4 (68-107)||(21857562-21857601)
chr4 (68-107)||(21913425-21913464)
chr4 (59-106)||(45620874-45620921)
chr4 (68-114)||(36385842-36385888)
chr4 (68-112)||(39310396-39310440)
chr4 (48-112)||(48956637-48956701)
chr4 (1-61)||(50348329-50348389)
[»] chr7 (10 HSPs)
chr7 (10-107)||(45431064-45431161)
chr7 (2-112)||(32249345-32249455)
chr7 (10-112)||(45431780-45431882)
chr7 (28-115)||(22492486-22492572)
chr7 (48-112)||(23752803-23752867)
chr7 (48-113)||(48204146-48204211)
chr7 (1-86)||(32492585-32492670)
chr7 (12-112)||(32250085-32250185)
chr7 (48-112)||(43844794-43844858)
chr7 (75-112)||(35753100-35753137)
[»] chr3 (16 HSPs)
chr3 (2-114)||(23513686-23513798)
chr3 (1-112)||(44321515-44321625)
chr3 (11-112)||(16436524-16436625)
chr3 (10-80)||(54706952-54707022)
chr3 (10-113)||(23514452-23514555)
chr3 (38-119)||(3799825-3799905)
chr3 (48-112)||(8923631-8923695)
chr3 (48-112)||(34329132-34329196)
chr3 (48-113)||(41326544-41326609)
chr3 (48-112)||(8922884-8922948)
chr3 (48-112)||(41325822-41325886)
chr3 (44-107)||(40810286-40810349)
chr3 (50-112)||(52103608-52103670)
chr3 (48-109)||(1772870-1772931)
chr3 (68-112)||(44312393-44312437)
chr3 (48-112)||(50107568-50107632)
[»] chr8 (8 HSPs)
chr8 (10-112)||(17625634-17625736)
chr8 (11-114)||(17626316-17626418)
chr8 (48-113)||(38443033-38443098)
chr8 (68-115)||(42578706-42578753)
chr8 (68-113)||(6462640-6462685)
chr8 (65-113)||(38443620-38443668)
chr8 (68-113)||(17938174-17938219)
chr8 (10-86)||(3565853-3565929)
[»] chr5 (5 HSPs)
chr5 (8-110)||(128663-128765)
chr5 (11-112)||(129322-129423)
chr5 (68-107)||(2639717-2639756)
chr5 (68-112)||(120073-120117)
chr5 (48-112)||(31600448-31600512)
[»] scaffold0178 (1 HSPs)
scaffold0178 (48-117)||(18476-18545)
[»] chr6 (2 HSPs)
chr6 (48-111)||(28548400-28548463)
chr6 (48-114)||(34260114-34260180)
[»] scaffold0402 (1 HSPs)
scaffold0402 (68-112)||(10856-10900)


Alignment Details
Target: chr2 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 33361158 - 33360938
Alignment:
Q  1 ttatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagc 100  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  33361158 ttatctttccctttttaatttcaaccgttggatattcttttaacatgtgtcacacatccatgaaggtaaatggtataaattgagcaaaggtaaatggagc 33361059  T
Q  101 aaagatggactcataaattatacttgaaaatcctaaaaactatcaccagccataaacaccattccactcccaagttgctcccacaacacaactcacatag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361058 aaagatggactcataaattatacttgaaaatcctaaaaactatcaccagccataaacaccattccactcccaagttgctcccacaacacaactcacatag 33360959  T
Q  201 cctcactccctctaaatcata 221  Q
    |||||||||||||||||||||    
T  33360958 cctcactccctctaaatcata 33360938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 20267276 - 20267161
Alignment:
Q  1 ttatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagc 100  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  20267276 ttatctttccctttttaatttcaaccgttggatattcttttaacatgtgtcgcacatccatgaagataaatgagataaattgagcaaaggtaaatggagc 20267177  T
Q  101 aaagatggactcataa 116  Q
    ||||||||||||||||    
T  20267176 aaagatggactcataa 20267161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 20268947 - 20269058
Alignment:
Q  1 ttatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagc 100  Q
    |||||||||||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||| |||||| |||||||||||||||| ||||||||||    
T  20268947 ttatctttccctttttaatttcaaccgttggatattcttttaacatgtgtcgcacatccatgaagataaatgagataaattgagcaaaggtaaatggagc 20269046  T
Q  101 aaagatggactc 112  Q
    ||||||||||||    
T  20269047 aaagatggactc 20269058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 41282960 - 41283024
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||| ||||||||   |||||||||||||  ||||||||| ||||||||||||    
T  41282960 tgtcacacatccatgatggtaaatgatgtaaattgagcaaacttaaatggagtaaagatggactc 41283024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 42148724 - 42148680
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||||||||||||| ||| |||||||||||||||||||||||    
T  42148724 aaatgggataaattgagaaaacataaatggagcaaagatggactc 42148680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 101
Target Start/End: Original strand, 41993318 - 41993406
Alignment:
Q  13 ttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagca 101  Q
    ||||||| |||| | ||||||| ||||||  ||  |||||||||||||| |||||||||||| ||||| |||  ||| |||||||||||    
T  41993318 ttttaatgtcaaccgttggatactattttgtcacatgtcacacatccataaaggtaaatggggtaaatggagttaaggtaaatggagca 41993406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 41983270 - 41983336
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactcat 114  Q
    |||||||||||  |||||| ||| ||||||||||||||   | ||||||||||||||||| ||||||    
T  41983270 tgtcacacatctgtgaagggaaaagggataaattgagccttggtaaatggagcaaagatgcactcat 41983336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 76 - 112
Target Start/End: Original strand, 4855372 - 4855408
Alignment:
Q  76 taaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||||||||| |||||||||||||||||| ||||    
T  4855372 taaattgagcaaacataaatggagcaaagatgaactc 4855408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 49400244 - 49400356
Alignment:
Q  1 ttatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagc 100  Q
    |||||||||| ||||||||||||| | ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||  |||||||||    
T  49400244 ttatctttccttttttaatttcaaccgttggatattcttttaacatgtgtcacacatgcatgaaggtaaatgggataaattgagcaaaggcaaatggagc 49400343  T
Q  101 aaagatggactca 113  Q
    |||||||||||||    
T  49400344 aaagatggactca 49400356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 2 - 109
Target Start/End: Complemental strand, 49399656 - 49399549
Alignment:
Q  2 tatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagca 101  Q
    ||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||||| |||||||||||| ||||||||||||||  ||||||||||    
T  49399656 tatctttccctttttaatttcaaccattggatattcttttaacacgtgtcacacatccatcaaggtaaatggggtaaattgagcaaaggcaaatggagca 49399557  T
Q  102 aagatgga 109  Q
    ||||||||    
T  49399556 aagatgga 49399549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 11 - 114
Target Start/End: Complemental strand, 27890669 - 27890566
Alignment:
Q  11 ctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggac 110  Q
    |||||||||||||| | || |||| ||||||  ||  |||||||||||||||| ||||||| |||||||||||||||||  |||||||||||||||||||    
T  27890669 ctttttaatttcaaccgtttgatactattttgccacatgtcacacatccatgatggtaaataggataaattgagcaaaggcaaatggagcaaagatggac 27890570  T
Q  111 tcat 114  Q
    ||||    
T  27890569 tcat 27890566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 112
Target Start/End: Original strand, 27891256 - 27891355
Alignment:
Q  13 ttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||| | ||||||| ||||||  ||  ||||| |||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||    
T  27891256 ttttaatttcaatcgttggatactattttgccacatgtcagacatccatgttggtaaatgggataaattgagtaaagataaatggagcaaagatggactc 27891355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 1764580 - 1764516
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||| |||||||||| | ||||| || |||||||||||||  ||||||||||||||||||||||    
T  1764580 tgtcatacatccatgatgataaatagggtaaattgagcaaacttaaatggagcaaagatggactc 1764516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 7338053 - 7338012
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatgga 109  Q
    ||||||||||||||||| ||| ||||||||||||||||||||    
T  7338053 aaatgggataaattgagaaaatataaatggagcaaagatgga 7338012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 49385149 - 49385085
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||||||||||||  ||||||||| |||||   |||||  ||||||||||||||||||||||    
T  49385149 tgtcacacatccatgattgtaaatggggtaaatgatgcaaacttaaatggagcaaagatggactc 49385085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 115
Target Start/End: Original strand, 7338831 - 7338870
Alignment:
Q  76 taaattgagcaaagataaatggagcaaagatggactcata 115  Q
    ||||||||| ||| ||||||||||||||||||||||||||    
T  7338831 taaattgaggaaacataaatggagcaaagatggactcata 7338870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 49385787 - 49385852
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactca 113  Q
    ||||||| |||||||| |||||||||| ||||| | ||||   ||||| |||||||||||||||||    
T  49385787 tgtcacatatccatgatggtaaatggggtaaatggtgcaatcctaaattgagcaaagatggactca 49385852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 4 - 114
Target Start/End: Original strand, 52238270 - 52238380
Alignment:
Q  4 tctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaa 103  Q
    ||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||| ||||||||||||||  ||||| ||||||    
T  52238270 tctttccctttttaatttcaaccattggatattcttttaacacgtgtcacacatccatgaaggtaaatggggtaaattgagcaaaggcaaatgaagcaaa 52238369  T
Q  104 gatggactcat 114  Q
    |||||||||||    
T  52238370 gatggactcat 52238380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 52237745 - 52237635
Alignment:
Q  1 ttatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagc 100  Q
    |||||||||| |||||||||||||   ||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||    
T  52237745 ttatctttcc-tttttaatttcaactgttggatattcttttaacatgtgtcacacatccatgaaggtaaatggggtaaattgagcaaaggcaaatggagc 52237647  T
Q  101 aaagatggactc 112  Q
    |||||| |||||    
T  52237646 aaagatagactc 52237635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 110
Target Start/End: Complemental strand, 53327566 - 53327458
Alignment:
Q  2 tatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagca 101  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||  |||||||||||| |||||||||||| |||||||  |||| |  |||||||||||    
T  53327566 tatctttccctttttaatttcaaccattggatattcttttaacaaatgtcacacatccgtgaaggtaaatgagataaatgaagcatatctaaatggagca 53327467  T
Q  102 aagatggac 110  Q
    |||||||||    
T  53327466 aagatggac 53327458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 55633655 - 55633554
Alignment:
Q  11 ctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggac 110  Q
    |||||||||||||| | || |||| ||||||  ||| |||||||||||||||| |||||||||||||||||||||||||  ||| |||||||||||||||    
T  55633655 ctttttaatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattgagcaaaggcaaacggagcaaagatggac 55633556  T
Q  111 tc 112  Q
    ||    
T  55633555 tc 55633554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 48957414 - 48957518
Alignment:
Q  2 tatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagca 101  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||  |||| ||||||| |||||||||||||| ||||| ||||| |  |||||| ||||    
T  48957414 tatctttccctttttaatttcaaccattggatattcttttaacacatgtcgcacatccgtgaaggtaaatgggttaaatggagcatatctaaatgaagca 48957513  T
Q  102 aagat 106  Q
    |||||    
T  48957514 aagat 48957518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 5469968 - 5470032
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||| | ||||||||||||||||||||||||  ||||||||||||||||||||||    
T  5469968 tgtcacacatccataatggtaaatgggataaattgagcaaacttaaatggagcaaagatggactc 5470032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 114
Target Start/End: Original strand, 36386039 - 36386105
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactcat 114  Q
    ||||||||||||||||    ||||||| ||||||||||||||  |||||||||||||||| ||||||    
T  36386039 tgtcacacatccatgactagaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcat 36386105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 8 - 112
Target Start/End: Original strand, 53320685 - 53320792
Alignment:
Q  8 tccctttttaatttcaaacattggatatta---ttttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaag-ataaatggagcaaa 103  Q
    ||||||||||||||||| ||||| ||||||   |||| ||| ||||| |||||||||||||||||||| | |||| ||| | |||  |||| ||||||||    
T  53320685 tccctttttaatttcaaccattgaatattattttttttacacgtgtcgcacatccatgaaggtaaatgaggtaaa-tgatccaagcctaaaaggagcaaa 53320783  T
Q  104 gatggactc 112  Q
    |||||||||    
T  53320784 gatggactc 53320792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 21857562 - 21857601
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatg 107  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  21857562 aaatgggataaattgaggaaaggtaaatggagcaaagatg 21857601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Original strand, 21913425 - 21913464
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatg 107  Q
    ||||||||||||||||| |||| |||||||||||||||||    
T  21913425 aaatgggataaattgaggaaaggtaaatggagcaaagatg 21913464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 106
Target Start/End: Complemental strand, 45620921 - 45620874
Alignment:
Q  59 catgaaggtaaatgggataaattgagcaaagataaatggagcaaagat 106  Q
    ||||| |||||||| |||||||||||||||  ||||||||||||||||    
T  45620921 catgatggtaaatgagataaattgagcaaatttaaatggagcaaagat 45620874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 36385842 - 36385888
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactcat 114  Q
    ||||||| ||||||||||||||  |||||||||||||||| ||||||    
T  36385842 aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactcat 36385888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 39310440 - 39310396
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||||||||||||| ||   ||||||||||||||||||||||    
T  39310440 aaatgggataaattgaggaatcttaaatggagcaaagatggactc 39310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 48956701 - 48956637
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||||| |||||||| |||||| | || |  ||||||||  ||||||||||||    
T  48956701 tgtcacacatccatgaagataaatggggtaaattaaacatatctaaatggaataaagatggactc 48956637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 50348389 - 50348329
Alignment:
Q  1 ttatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccat 61  Q
    |||| ||| |||||||||||| || ||||||||||||||||  ||  ||||||||||||||    
T  50348389 ttatatttacctttttaattttaaccattggatattattttgccacatgtcacacatccat 50348329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 74; Significance: 4e-34; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 10 - 107
Target Start/End: Complemental strand, 45431161 - 45431064
Alignment:
Q  10 cctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatg 107  Q
    ||||||| ||||||| | |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  45431161 ccttttttatttcaaccgttggatattattttaacacgtgtcacacatccatgatggtaaatgggataaattgagcaaagacaaatggagcaaagatg 45431064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 2 - 112
Target Start/End: Complemental strand, 32249455 - 32249345
Alignment:
Q  2 tatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagca 101  Q
    ||||||| ||||||||||||||| ||||||||||| |||||||| |||||||||||| ||||| | ||||||| |||||||| |||||  ||||||| ||    
T  32249455 tatctttacctttttaatttcaaccattggatattcttttaacaagtgtcacacatctatgaaaggaaatggggtaaattgaacaaaggcaaatggaaca 32249356  T
Q  102 aagatggactc 112  Q
    |||||||||||    
T  32249355 aagatggactc 32249345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 112
Target Start/End: Original strand, 45431780 - 45431882
Alignment:
Q  10 cctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatgga 109  Q
    ||||||| ||||| | |||||||||||||||||||| || |||||||||||||| |||||||| | ||||| ||||||||  ||||||||||||||| ||    
T  45431780 ccttttttatttcgaccattggatattattttaacacgtatcacacatccatgatggtaaatgagttaaatggagcaaaggcaaatggagcaaagattga 45431879  T
Q  110 ctc 112  Q
    |||    
T  45431880 ctc 45431882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 28 - 115
Target Start/End: Original strand, 22492486 - 22492572
Alignment:
Q  28 ttggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactcata 115  Q
    ||||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||  ||||||||| |||||| |||||||    
T  22492486 ttggatattattttagcacgtgtcacacatccatgatggtaaatgggataaatggagcaaaggcaaatggagc-aagatgaactcata 22492572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 23752803 - 23752867
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||| ||||||||||||||||||||||||| |||| | |||||||||| ||||    
T  23752803 tgtcacacatccatgatggtaaatgggataaattgagcaaaggtaaaagaagcaaagatgcactc 23752867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 48204211 - 48204146
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactca 113  Q
    ||||| |||||||||| ||||||| |||||||| |||||||  |||||||||||||||||||||||    
T  48204211 tgtcatacatccatgatggtaaataggataaatggagcaaacttaaatggagcaaagatggactca 48204146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 32492670 - 32492585
Alignment:
Q  1 ttatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagca 86  Q
    |||| ||| ||||||||| ||||| | ||||||||||||||  ||  |||||||||||||| ||||| |||||| ||||| |||||    
T  32492670 ttattttttcctttttaaattcaaccgttggatattattttgccacatgtcacacatccataaaggtcaatggggtaaatggagca 32492585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 112
Target Start/End: Original strand, 32250085 - 32250185
Alignment:
Q  12 tttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggact 111  Q
    ||||| ||||||| | ||||||||||||||  ||  |||||| ||||  |||  ||||||| | | |||||||||||| ||||||||||||||||| |||    
T  32250085 ttttttatttcaaccgttggatattattttgtcacatgtcacgcatctgtgatagtaaatgaggtgaattgagcaaaggtaaatggagcaaagatgaact 32250184  T
Q  112 c 112  Q
    |    
T  32250185 c 32250185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 43844858 - 43844794
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||    |||||||| ||||||||||||||  |||||||||||||||| ||||    
T  43844858 tgtcacacatccatgtctttaaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 43844794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 75 - 112
Target Start/End: Original strand, 35753100 - 35753137
Alignment:
Q  75 ataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  35753100 ataaattgagtaaacataaatggagcaaagatggactc 35753137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 2 - 114
Target Start/End: Complemental strand, 23513798 - 23513686
Alignment:
Q  2 tatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagca 101  Q
    ||||| ||||||||||||||||| |||| ||||||  ||| ||| ||||||  ||||||||| | |||||||||||||||||||||||||||||||||||    
T  23513798 tatctctccctttttaatttcaaccattagatattcctttgacacgtgtcatgcatccatgatgataaatgggataaattgagcaaagataaatggagca 23513699  T
Q  102 aagatggactcat 114  Q
    |||||||||||||    
T  23513698 aagatggactcat 23513686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 44321515 - 44321625
Alignment:
Q  1 ttatctttccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagc 100  Q
    |||||||| ||||||||||||||| ||||| ||||| |||||||| |||||||||||| ||||||||||||||| |||||||||||||   |||||||||    
T  44321515 ttatcttttcctttttaatttcaaccattgaatattcttttaacacgtgtcacacatcaatgaaggtaaatggg-taaattgagcaaaagcaaatggagc 44321613  T
Q  101 aaagatggactc 112  Q
    ||||||||||||    
T  44321614 aaagatggactc 44321625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 16436625 - 16436524
Alignment:
Q  11 ctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggac 110  Q
    |||||||||||||| | || |||| ||||||  ||| |||||||||||||||| |||||||||||||||||||||||||  ||| |||||||||||||||    
T  16436625 ctttttaatttcaaccgtttgatactattttgccatatgtcacacatccatgatggtaaatgggataaattgagcaaaggcaaacggagcaaagatggac 16436526  T
Q  111 tc 112  Q
    ||    
T  16436525 tc 16436524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 10 - 80
Target Start/End: Complemental strand, 54707022 - 54706952
Alignment:
Q  10 cctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaat 80  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||||||||||  |||||||||||||||    
T  54707022 cctttttaatttcaaccgttggatattattttgacatgtgtcacacatccatgatcgtaaatgggataaat 54706952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 10 - 113
Target Start/End: Original strand, 23514452 - 23514555
Alignment:
Q  10 cctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatgga 109  Q
    ||||||| ||||||| | || |||||| ||||  ||  ||||||||||||||||  ||||||||| ||||||||||||||  ||||||||||||||||||    
T  23514452 ccttttttatttcaaccgttagatatttttttgccacatgtcacacatccatgatagtaaatggggtaaattgagcaaaggcaaatggagcaaagatgga 23514551  T
Q  110 ctca 113  Q
    ||||    
T  23514552 ctca 23514555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 38 - 119
Target Start/End: Complemental strand, 3799905 - 3799825
Alignment:
Q  38 ttttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactcataaatt 119  Q
    ||||| ||||||||||||||| ||| |   |||||||||||||||||| ||| |||||||||||||||||||||| ||||||    
T  3799905 ttttaccatgtgtcacacatctatgcattaaaatgggataaattgagc-aagctaaatggagcaaagatggactcctaaatt 3799825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 8923631 - 8923695
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||| |||||||||| ||||| |||||||   |||||||||||||||||||||    
T  8923631 tgtcacacatccatgatggtaaatggggtaaatggagcaaacccaaatggagcaaagatggactc 8923695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 48 - 112
Target Start/End: Original strand, 34329132 - 34329196
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||||||||||||  ||||||||  ||||||||||||| ||||||| |||||||||||||||    
T  34329132 tgtcacacatccatgatagtaaatggagtaaattgagcaaaaataaatgaagcaaagatggactc 34329196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 113
Target Start/End: Original strand, 41326544 - 41326609
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactca 113  Q
    |||||||||||||||| ||||||| || ||||| |||||||   ||||||||||||||||||||||    
T  41326544 tgtcacacatccatgatggtaaattgggtaaatggagcaaacccaaatggagcaaagatggactca 41326609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 8922948 - 8922884
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||| | |||||||| |||||||||||||  ||||||||| ||||||| ||||    
T  8922948 tgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactc 8922884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 41325886 - 41325822
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||| | |||||||| |||||||||||||  ||||||||| ||||||| ||||    
T  41325886 tgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatggagtaaagatgaactc 41325822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 44 - 107
Target Start/End: Original strand, 40810286 - 40810349
Alignment:
Q  44 catgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatg 107  Q
    ||||||||||||||||||||    ||||||||||||||||| |||  |||||||||||||||||    
T  40810286 catgtgtcacacatccatgacttaaaatgggataaattgaggaaacttaaatggagcaaagatg 40810349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 50 - 112
Target Start/End: Complemental strand, 52103670 - 52103608
Alignment:
Q  50 tcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||||||||||  ||||||||| ||||| |||||||  |||||| |||||||||||||||    
T  52103670 tcacacatccatgatagtaaatggggtaaatggagcaaacctaaatgaagcaaagatggactc 52103608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 48 - 109
Target Start/End: Complemental strand, 1772931 - 1772870
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatgga 109  Q
    ||||||| ||||||||  ||||||||| |||||||||||||  ||||||||||||| |||||    
T  1772931 tgtcacatatccatgatagtaaatggggtaaattgagcaaacttaaatggagcaaatatgga 1772870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 44312393 - 44312437
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||| ||||||||| ||| |||||||||||||||||||||||    
T  44312393 aaatggggtaaattgaggaaacataaatggagcaaagatggactc 44312437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 50107632 - 50107568
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||| | |||||||| |||||||||||||  |||||| || ||||||| ||||    
T  50107632 tgtcacacatccatgatgataaatggggtaaattgagcaaacctaaatgtagtaaagatgaactc 50107568  T

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Target: chr8 (Bit Score: 55; Significance: 1e-22; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 17625736 - 17625634
Alignment:
Q  10 cctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatgga 109  Q
    |||||||||||||||  |||||||||| |||| ||| ||||| |||||||||||||||||||||| ||||| | ||||   |||||||||||||||||||    
T  17625736 cctttttaatttcaactattggatattcttttgacacgtgtcgcacatccatgaaggtaaatggggtaaatggtgcaagcctaaatggagcaaagatgga 17625637  T
Q  110 ctc 112  Q
    |||    
T  17625636 ctc 17625634  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 17626316 - 17626418
Alignment:
Q  11 ctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggac 110  Q
    |||||| ||||||| | |||||||||||| || || ||||||||||||||||| |||||||||| ||||| | ||||||| |||||||||||| ||||||    
T  17626316 cttttttatttcaaccgttggatattattataccacgtgtcacacatccatgatggtaaatggggtaaatggtgcaaagacaaatggagcaaa-atggac 17626414  T
Q  111 tcat 114  Q
    ||||    
T  17626415 tcat 17626418  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 113
Target Start/End: Complemental strand, 38443098 - 38443033
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactca 113  Q
    |||||||||||||||| |||||||||| ||||| ||||| |  |||||||||||||||||||||||    
T  38443098 tgtcacacatccatgatggtaaatggggtaaatggagcagacttaaatggagcaaagatggactca 38443033  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 42578753 - 42578706
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactcata 115  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  42578753 aaatggggtaaattgagcaaacataaatggagcaaagatggactcata 42578706  T

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Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 6462640 - 6462685
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactca 113  Q
    ||||||| ||||||||||||| ||||||||||||||||||||||||    
T  6462640 aaatggggtaaattgagcaaacataaatggagcaaagatggactca 6462685  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 113
Target Start/End: Original strand, 38443620 - 38443668
Alignment:
Q  65 ggtaaatgggataaattgagcaaagataaatggagcaaagatggactca 113  Q
    |||||||||| ||||| |||||||  |||||||||||||||||||||||    
T  38443620 ggtaaatggggtaaatggagcaaacttaaatggagcaaagatggactca 38443668  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 113
Target Start/End: Complemental strand, 17938219 - 17938174
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactca 113  Q
    ||||||| ||||||||||||||  |||||||||||||||| |||||    
T  17938219 aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactca 17938174  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 10 - 86
Target Start/End: Complemental strand, 3565929 - 3565853
Alignment:
Q  10 cctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagca 86  Q
    ||||||||||||||| |||| ||||||||||||  |  ||| ||||||| || ||||||||| || ||||| |||||    
T  3565929 cctttttaatttcaaccattagatattattttacaacatgttacacatcaataaaggtaaatagggtaaatggagca 3565853  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 110
Target Start/End: Complemental strand, 128765 - 128663
Alignment:
Q  8 tccctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatg 107  Q
    |||||||| |||||||| |||| |||||| |||| ||| ||||| |||||| |||||||||||||| |||||| | ||||   |||||||||||||||||    
T  128765 tcccttttaaatttcaaccattcgatattcttttgacacgtgtcgcacatctatgaaggtaaatggaataaatggtgcaagcctaaatggagcaaagatg 128666  T
Q  108 gac 110  Q
    |||    
T  128665 gac 128663  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 129322 - 129423
Alignment:
Q  11 ctttttaatttcaaacattggatattattttaacatgtgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggac 110  Q
    |||||| ||||||| | |||||||||| | || || ||||||||||||||||| | |||||| | ||||| | ||||||| |||||||||||| ||||||    
T  129322 cttttttatttcaaccgttggatattagtatatcacgtgtcacacatccatgatgataaatgaggtaaatggtgcaaagacaaatggagcaaatatggac 129421  T
Q  111 tc 112  Q
    ||    
T  129422 tc 129423  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 107
Target Start/End: Complemental strand, 2639756 - 2639717
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatg 107  Q
    ||||||| ||||||||||||| ||||||||||||||||||    
T  2639756 aaatggggtaaattgagcaaaaataaatggagcaaagatg 2639717  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 120117 - 120073
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||| ||||||||| |||| ||||||||||||||||| ||||    
T  120117 aaatggggtaaattgaggaaagctaaatggagcaaagatgaactc 120073  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 31600512 - 31600448
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    |||||||||||||||| | |||||||| ||||| ||||||   |||||||||||  |||||||||    
T  31600512 tgtcacacatccatgatgataaatggggtaaatggagcaagtctaaatggagcatggatggactc 31600448  T

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Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 117
Target Start/End: Complemental strand, 18545 - 18476
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactcataaa 117  Q
    |||||||||||||||| |||||||||  |||||||| ||||  ||||||||| |||||||||||| ||||    
T  18545 tgtcacacatccatgatggtaaatggtgtaaattgaacaaacttaaatggagtaaagatggactcctaaa 18476  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 111
Target Start/End: Original strand, 28548400 - 28548463
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggact 111  Q
    |||||||||||||| | | |||||| |||||||||||||||  ||||||||| |||||||||||    
T  28548400 tgtcacacatccataatgataaatgagataaattgagcaaaagtaaatggagtaaagatggact 28548463  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 114
Target Start/End: Complemental strand, 34260180 - 34260114
Alignment:
Q  48 tgtcacacatccatgaaggtaaatgggataaattgagcaaagataaatggagcaaagatggactcat 114  Q
    ||||||||||||||||    ||||||| ||||||||| ||||  |||||||||||||||||||||||    
T  34260180 tgtcacacatccatgacttgaaatggggtaaattgaggaaaggaaaatggagcaaagatggactcat 34260114  T

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Target: scaffold0402 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 112
Target Start/End: Complemental strand, 10900 - 10856
Alignment:
Q  68 aaatgggataaattgagcaaagataaatggagcaaagatggactc 112  Q
    ||||||| ||||||||||||||  |||||||||||||||| ||||    
T  10900 aaatggggtaaattgagcaaagtgaaatggagcaaagatgcactc 10856  T

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