View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3160_high_4 (Length: 390)
Name: NF3160_high_4
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3160_high_4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 25 - 373
Target Start/End: Complemental strand, 21182532 - 21182184
Alignment:
| Q |
25 |
tagtgaatgttcacttgttgagtgagtgttttagtctttgcttttgtgatgtagttgaatactgtattagaataatgaattttgatataaaacttggatg |
124 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||| |||||||||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
21182532 |
tagtgaatgtccacttgttgagtgcctgttttagtatttgcttttgtgataaagtggaatactgtattagaaaaatgaattttgatataaaacttggatg |
21182433 |
T |
|
| Q |
125 |
tcgaatacagcatgctttgatttttgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagagatagagataaacacgtacagtttcacac |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182432 |
tcgaatacagcatgctttgatttttgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagagatagagataaacacgtacagtttcacac |
21182333 |
T |
|
| Q |
225 |
acggtgtttgcacgttgatgttcaaataacacaactattatattataagtagttacgtttaaggcttcatattttcaattttaggaattatttgcttcat |
324 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21182332 |
acggtgtttgcacgttgatgttcaaataacacaactattatattatgagtagttacgtttaaggcttcatattttcaattttaggaattatttgcttcat |
21182233 |
T |
|
| Q |
325 |
tcttttaataattggggattattcctagaatatatatttatctgcactt |
373 |
Q |
| |
|
||||||||||||||||||||||| | | || |||||||||||||||||| |
|
|
| T |
21182232 |
tcttttaataattggggattatttcaataagatatatttatctgcactt |
21182184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 168
Target Start/End: Complemental strand, 32122325 - 32122296
Alignment:
| Q |
139 |
ctttgatttttgtgtattttttaaatgtgt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
32122325 |
ctttgatttttgtgtattttttaaatgtgt |
32122296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 140 - 196
Target Start/End: Complemental strand, 26631746 - 26631688
Alignment:
| Q |
140 |
tttgattttt--gtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagag |
196 |
Q |
| |
|
|||||||||| |||||||||| |||||||| |||||||||||| |||||||||||||| |
|
|
| T |
26631746 |
tttgatttttacgtgtatttttaaaatgtgtgtaagttgtagaatataaaaagtaagag |
26631688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 149 - 209
Target Start/End: Original strand, 30790779 - 30790836
Alignment:
| Q |
149 |
tgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagagatagagataaaca |
209 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||| |||| ||||||||||||| |
|
|
| T |
30790779 |
tgtgtattttttaaatgtgtgtaagttgtagaagataaaa---aagaaatagagataaaca |
30790836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 181
Target Start/End: Original strand, 42205349 - 42205386
Alignment:
| Q |
144 |
atttttgtgtattttttaaatgtgtttaagttgtagaa |
181 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
42205349 |
atttttgtgtattttttaaatgtgtgtaagttgtagaa |
42205386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 149 - 197
Target Start/End: Original strand, 20809087 - 20809135
Alignment:
| Q |
149 |
tgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagaga |
197 |
Q |
| |
|
|||||||||||||||||||| || |||||| || ||||||||||||||| |
|
|
| T |
20809087 |
tgtgtattttttaaatgtgtgtatgttgtaaaagataaaaagtaagaga |
20809135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 197
Target Start/End: Complemental strand, 33844221 - 33844164
Alignment:
| Q |
140 |
tttgatttttgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagaga |
197 |
Q |
| |
|
|||| ||||||||||||||| ||||| |||||||||||| | ||||| ||||||||| |
|
|
| T |
33844221 |
tttggtttttgtgtatttttgaaatgcatttaagttgtaggagataaatagtaagaga |
33844164 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 189
Target Start/End: Complemental strand, 14123756 - 14123716
Alignment:
| Q |
149 |
tgtgtattttttaaatgtgtttaagttgtagaaaataaaaa |
189 |
Q |
| |
|
||||||||||| |||||||| |||||||||||| ||||||| |
|
|
| T |
14123756 |
tgtgtatttttaaaatgtgtataagttgtagaagataaaaa |
14123716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 43072262 - 43072214
Alignment:
| Q |
149 |
tgtgtattttttaaatgtgtttaagttgtagaaaataaaaagtaagaga |
197 |
Q |
| |
|
||||||||||| |||||||| |||| ||||||| ||||||||| ||||| |
|
|
| T |
43072262 |
tgtgtatttttgaaatgtgtgtaagctgtagaagataaaaagttagaga |
43072214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 192
Target Start/End: Original strand, 4445362 - 4445410
Alignment:
| Q |
144 |
atttttgtgtattttttaaatgtgtttaagttgtagaaaataaaaagta |
192 |
Q |
| |
|
|||| ||||||||||| |||||| | |||||||||||| |||||||||| |
|
|
| T |
4445362 |
atttctgtgtatttttgaaatgtttgtaagttgtagaatataaaaagta |
4445410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 32056218 - 32056166
Alignment:
| Q |
157 |
ttttaaatgtgtttaagttgtagaaaataaaaagtaagagatagagataaaca |
209 |
Q |
| |
|
||||| ||| || |||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
32056218 |
ttttacatgagtgtaagttgtagaagataaaaagtagaagatagagataaaca |
32056166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 209
Target Start/End: Complemental strand, 36394641 - 36394574
Alignment:
| Q |
145 |
tttttgtgtattttttaaa-tgtgtttaagttgtagaaaataaaaagtaa--gagatagagataaaca |
209 |
Q |
| |
|
||||||| ||||||||||| ||||| | ||| |||||| ||||||||||| |||||||||||||||| |
|
|
| T |
36394641 |
tttttgtctattttttaaaatgtgtgtgagtggtagaagataaaaagtaagagagatagagataaaca |
36394574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University