View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3160_high_6 (Length: 353)
Name: NF3160_high_6
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3160_high_6 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 15 - 338
Target Start/End: Complemental strand, 6545429 - 6545106
Alignment:
| Q |
15 |
agatgaaccatcaccaaacatgtcttctgtcaaacacatgaacaacaaaacacatacaaaaggatgtgacatcttttcaggtagttggattcctcattct |
114 |
Q |
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| T |
6545429 |
agatgaaccatctccaaacatgtcttctgtccaacacatgaataacaaaacacatacaaaaggatgtgacatcttttcaggtagttggattcctcattct |
6545330 |
T |
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| Q |
115 |
gaaggaccttactataacaatgaaacatgcaaatggatgatagatgaacaaaactgcatgaagtttggtaggccggacgatgagtatcttcattggagat |
214 |
Q |
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| T |
6545329 |
gaaggaccttattacaacaatgaaacatgcaaatggatgatagatgaacaaaactgcatgaagtttggtaggccggacgatgagtatcttcattggagat |
6545230 |
T |
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| Q |
215 |
ggaaaccaaacgattgcgagcttccattgtttaatgcaactcaattcttagagattgttagaggaaagaaaatggtttttgttggagattctgttgggag |
314 |
Q |
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| T |
6545229 |
ggaaaccaaacgaatgcgagcttccgttgtttaatgcaactcaattcttagagattgttagaggaaagaaaatggtttttgttggagattctgttgggag |
6545130 |
T |
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| Q |
315 |
aaatcagttgcaatctttgttgtg |
338 |
Q |
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| T |
6545129 |
aaatcagttgcaatctttgttgtg |
6545106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 6557842 - 6557790
Alignment:
| Q |
268 |
attgttagaggaaagaaaatggtttttgttggagattctgttgggagaaatca |
320 |
Q |
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| T |
6557842 |
attgttagaggaaaatctatggcttttgttggagattctgttggtagaaatca |
6557790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 320
Target Start/End: Complemental strand, 4839298 - 4839186
Alignment:
| Q |
208 |
tggagatggaaaccaaacgattgcgagcttccattgtttaatgcaactcaattcttagagattgttagaggaaagaaaatggtttttgttggagattctg |
307 |
Q |
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| T |
4839298 |
tggagatggaaacctgataattgtgaacttcctttgtttgatgcaactcagtttttcaagattgttaagggaaagtcaatggcttttgtcggtgactcta |
4839199 |
T |
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| Q |
308 |
ttgggagaaatca |
320 |
Q |
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| T |
4839198 |
ttgggagaaatca |
4839186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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