View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3160_low_1 (Length: 482)

Name: NF3160_low_1
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3160_low_1
NF3160_low_1
[»] chr4 (8 HSPs)
chr4 (296-465)||(24056783-24056952)
chr4 (286-330)||(22905032-22905076)
chr4 (286-330)||(22956700-22956744)
chr4 (286-330)||(43441788-43441832)
chr4 (287-330)||(44645346-44645389)
chr4 (388-448)||(26728379-26728439)
chr4 (258-334)||(26728493-26728569)
chr4 (272-344)||(34821674-34821746)
[»] chr8 (2 HSPs)
chr8 (278-336)||(4903479-4903537)
chr8 (279-332)||(3961182-3961235)
[»] chr7 (1 HSPs)
chr7 (278-318)||(32016682-32016722)


Alignment Details
Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 296 - 465
Target Start/End: Original strand, 24056783 - 24056952
Alignment:
Q  296 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgacttgcatctccgttagcgatccctcctcaaaccgcatcccctccaac 395  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  24056783 agccaccactttggacggagctgaactcttccaaatatgcgtaaacaccttgactcgcatctctgttagcgatccctcctcaaaccgcatcccctccaac 24056882  T
Q  396 ttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccaccaccatacatcctcacctt 465  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  24056883 ttcttgtacatagagttcaccgagaaccaaccgttctcttccaatccccaccaccatacatcctcacctt 24056952  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 22905032 - 22905076
Alignment:
Q  286 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 330  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22905032 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22905076  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 22956700 - 22956744
Alignment:
Q  286 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 330  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  22956700 tccaagaaaaagccacgactttggacggagccggactcttccaaa 22956744  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 286 - 330
Target Start/End: Original strand, 43441788 - 43441832
Alignment:
Q  286 tccaagaaaaagccaccactttggacggagctgaactcttccaaa 330  Q
    |||||||||||||||| |||||||||||||| | |||||||||||    
T  43441788 tccaagaaaaagccacgactttggacggagccggactcttccaaa 43441832  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 287 - 330
Target Start/End: Complemental strand, 44645389 - 44645346
Alignment:
Q  287 ccaagaaaaagccaccactttggacggagctgaactcttccaaa 330  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||    
T  44645389 ccaagaaaaagccaccaccttggatggagccgaactcttccaaa 44645346  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 388 - 448
Target Start/End: Complemental strand, 26728439 - 26728379
Alignment:
Q  388 cctccaacttcttgtacatagagttcaccgagaaacaaccgttctcttccaatccccacca 448  Q
    |||||||||||||||||||||| |||||||  || | ||| ||| ||||||||| ||||||    
T  26728439 cctccaacttcttgtacatagatttcaccgtaaatccaccattcccttccaatctccacca 26728379  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 258 - 334
Target Start/End: Complemental strand, 26728569 - 26728493
Alignment:
Q  258 ttcgtcgggatccaatcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatg 334  Q
    |||||||| |||||||||| ||| | ||||||||| ||  | |||||||| |||||||| | ||| |||||||||||    
T  26728569 ttcgtcggtatccaatcatgaagcaatttccaagagaattctaccactttagacggagccggacttttccaaatatg 26728493  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 272 - 344
Target Start/End: Original strand, 34821674 - 34821746
Alignment:
Q  272 atcataaagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcgtaaacacc 344  Q
    ||||| |||||||||||||| |||  | |||||||| || ||||| |||||||||| ||| |||| |||||||    
T  34821674 atcatgaagaagtttccaagcaaagacgaccactttagatggagccgaactcttccgaatttgcgcaaacacc 34821746  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 278 - 336
Target Start/End: Complemental strand, 4903537 - 4903479
Alignment:
Q  278 aagaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaatatgcg 336  Q
    |||||||||||||| |||| |||||||||| ||||| || |  ||||||||||||||||    
T  4903537 aagaagtttccaagtaaaaaccaccactttcgacggtgccgggctcttccaaatatgcg 4903479  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 332
Target Start/End: Original strand, 3961182 - 3961235
Alignment:
Q  279 agaagtttccaagaaaaagccaccactttggacggagctgaactcttccaaata 332  Q
    ||||||||||||||||||||||| || || || |||||||| || |||||||||    
T  3961182 agaagtttccaagaaaaagccacgacctttgagggagctgagcttttccaaata 3961235  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 278 - 318
Target Start/End: Complemental strand, 32016722 - 32016682
Alignment:
Q  278 aagaagtttccaagaaaaagccaccactttggacggagctg 318  Q
    |||||||||||||||||||||||| ||||| ||||| ||||    
T  32016722 aagaagtttccaagaaaaagccacaacttttgacggggctg 32016682  T

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