View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3160_low_10 (Length: 336)

Name: NF3160_low_10
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3160_low_10
NF3160_low_10
[»] chr5 (2 HSPs)
chr5 (6-83)||(7692331-7692408)
chr5 (14-83)||(36602783-36602852)
[»] chr3 (6 HSPs)
chr3 (16-83)||(47173697-47173764)
chr3 (14-83)||(9283921-9283990)
chr3 (8-79)||(1185322-1185393)
chr3 (9-79)||(51280612-51280682)
chr3 (14-65)||(21118395-21118446)
chr3 (14-65)||(21125815-21125866)
[»] chr2 (2 HSPs)
chr2 (14-83)||(39502592-39502661)
chr2 (23-65)||(45297705-45297747)
[»] chr1 (1 HSPs)
chr1 (14-83)||(48714564-48714633)
[»] chr8 (2 HSPs)
chr8 (8-79)||(34928626-34928697)
chr8 (14-79)||(16981096-16981161)
[»] chr4 (2 HSPs)
chr4 (14-79)||(4428803-4428868)
chr4 (16-79)||(33800534-33800597)
[»] chr7 (3 HSPs)
chr7 (8-79)||(5781955-5782026)
chr7 (14-79)||(34960223-34960288)
chr7 (14-77)||(24725102-24725165)
[»] chr6 (2 HSPs)
chr6 (14-74)||(1751134-1751194)
chr6 (15-79)||(33075112-33075176)
[»] scaffold0810 (1 HSPs)
scaffold0810 (14-77)||(4690-4753)


Alignment Details
Target: chr5 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 6 - 83
Target Start/End: Original strand, 7692331 - 7692408
Alignment:
Q  6 aggtgttcggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 83  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7692331 aggtgtttggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 7692408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 36602783 - 36602852
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36602783 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 36602852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 47173697 - 47173764
Alignment:
Q  16 cccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47173697 cccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 47173764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Original strand, 9283921 - 9283990
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 83  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9283921 ggcccaacttttttgagacataaaagttactttaaacttaaagttaaaaatatgagctttagaaattaag 9283990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 1185393 - 1185322
Alignment:
Q  8 gtgttcggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  1185393 gtgtttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatatgagctttagaaat 1185322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 9 - 79
Target Start/End: Original strand, 51280612 - 51280682
Alignment:
Q  9 tgttcggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    |||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||    
T  51280612 tgtttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatataagctttagaaat 51280682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 21118395 - 21118446
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaata 65  Q
    |||||| ||||||| ||||||| |||||||||||||||||||||||||||||    
T  21118395 ggcccagctttttttagacatataagctactttaaacttaaagttaaaaata 21118446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 65
Target Start/End: Original strand, 21125815 - 21125866
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaata 65  Q
    |||||| ||||||| |  |||| |||||||||||||||||||||||||||||    
T  21125815 ggcccagctttttttaagcatataagctactttaaacttaaagttaaaaata 21125866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 39502661 - 39502592
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 83  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  39502661 ggcccaacttttttgagacataaaagttactttaaacttaaagttaaaaatatgagctttagaaattaag 39502592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 65
Target Start/End: Original strand, 45297705 - 45297747
Alignment:
Q  23 tttttgagacataaaagctactttaaacttaaagttaaaaata 65  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
T  45297705 ttttttaggcatataagctactttaaacttaaagttaaaaata 45297747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 14 - 83
Target Start/End: Complemental strand, 48714633 - 48714564
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaattaag 83  Q
    |||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  48714633 ggcccaacttttttgagacataaaagttactttaaatttaaagttaaaaatatgagctttagaaattaag 48714564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 8 - 79
Target Start/End: Complemental strand, 34928697 - 34928626
Alignment:
Q  8 gtgttcggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  34928697 gtgtttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatatgagctttagaaat 34928626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 16981096 - 16981161
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    |||| ||||||||| ||||| | |||| |||||||||||||| |||||| ||| ||||||| ||||    
T  16981096 ggcctaacttttttcagacaaagaagcaactttaaacttaaatttaaaattattagctttaaaaat 16981161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 14 - 79
Target Start/End: Original strand, 4428803 - 4428868
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  4428803 ggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatatgagctttagaaat 4428868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 33800597 - 33800534
Alignment:
Q  16 cccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    ||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||    
T  33800597 cccaacttttttgaggcatagaaactactttaaacttaaagttaaaaatatgagctttagaaat 33800534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 5781955 - 5782026
Alignment:
Q  8 gtgttcggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    ||||| ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||    
T  5781955 gtgtttggcccaacttttttgaggcatagaagctactttaaacttaaagttaaaaatatgagctttaaaaat 5782026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 14 - 79
Target Start/End: Complemental strand, 34960288 - 34960223
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    |||| |||||||||||  |||| || |||||||||| |||||||||||||||||||||||| ||||    
T  34960288 ggcctaacttttttgaagcatagaaactactttaaatttaaagttaaaaatatgagctttaaaaat 34960223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 24725165 - 24725102
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaa 77  Q
    |||||||||||||| |  |||| |||||||||||  |||||||||||||||| | |||||||||    
T  24725165 ggcccaacttttttcaagcatagaagctactttacgcttaaagttaaaaataagtgctttagaa 24725102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 14 - 74
Target Start/End: Complemental strand, 1751194 - 1751134
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagcttta 74  Q
    ||||||||||||| || ||||||||||||||||||||||||||||  ||| ||||||||||    
T  1751194 ggcccaactttttcgaaacataaaagctactttaaacttaaagttctaaacatgagcttta 1751134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 33075112 - 33075176
Alignment:
Q  15 gcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaaat 79  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||| ||| ||||||| ||||    
T  33075112 gcccaacttttttcagacatagaagcaactttaaacttaaagttaaaattattagctttaaaaat 33075176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0810 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0810
Description:

Target: scaffold0810; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 77
Target Start/End: Complemental strand, 4753 - 4690
Alignment:
Q  14 ggcccaacttttttgagacataaaagctactttaaacttaaagttaaaaatatgagctttagaa 77  Q
    |||||||||||||||   |||| |||||||||||  |||||||||||||||| | |||||||||    
T  4753 ggcccaacttttttgtagcatagaagctactttacgcttaaagttaaaaataagtgctttagaa 4690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University