View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3160_low_11 (Length: 313)
Name: NF3160_low_11
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3160_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 296
Target Start/End: Complemental strand, 15729129 - 15728845
Alignment:
| Q |
13 |
atcagccaattatcaacccaatatttggaattacgatatcttacaatccttgaaacacgattacgaggtaattcannnnnnnnn-atcaagtagtttagt |
111 |
Q |
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| T |
15729129 |
atcagccaattaccaacccaatatttggaattacgatatcttacaatccttgaaacacgattacgaggtaattctttttttttttatcaagtattctagt |
15729030 |
T |
|
| Q |
112 |
ggctaaaacttcacattttcattgttacttactcgtaatttatattttgtattatttctaggatgctcgatacgtggataggagtaggagtctgcaagag |
211 |
Q |
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||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
15729029 |
ggctaaaacttcacattttcacttttaattactcgtaatttatattttgtattatttctaggatgctcgatacgtggataggagtaggaggctgcaagag |
15728930 |
T |
|
| Q |
212 |
gaagtaagaagaatgatcaaggatgaaaatgtaaagattctcgagttaattgatactgtgaaacaattaggtctcagttaccact |
296 |
Q |
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||||||| ||||||||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||| |
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| T |
15728929 |
gaagtaaaaagaatgattaaggatgaaaatgtaaatattctagagttaatcgatactgtgaaacaattaggtctcagttaccact |
15728845 |
T |
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