View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3160_low_18 (Length: 201)

Name: NF3160_low_18
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3160_low_18
NF3160_low_18
[»] chr5 (3 HSPs)
chr5 (19-186)||(36202784-36202952)
chr5 (30-103)||(11043066-11043139)
chr5 (38-107)||(29006218-29006286)
[»] chr3 (6 HSPs)
chr3 (19-106)||(50914689-50914776)
chr3 (19-106)||(52653523-52653610)
chr3 (39-105)||(2257455-2257521)
chr3 (59-108)||(23686022-23686071)
chr3 (59-108)||(24058259-24058308)
chr3 (19-103)||(33709572-33709660)
[»] chr8 (2 HSPs)
chr8 (19-111)||(12729135-12729227)
chr8 (19-105)||(28696364-28696450)
[»] chr2 (1 HSPs)
chr2 (19-108)||(34681380-34681469)
[»] chr4 (6 HSPs)
chr4 (19-105)||(122829-122915)
chr4 (19-105)||(20251147-20251233)
chr4 (19-100)||(48780142-48780222)
chr4 (19-106)||(24129623-24129710)
chr4 (29-76)||(1533134-1533180)
chr4 (27-76)||(1495062-1495110)
[»] chr7 (2 HSPs)
chr7 (19-100)||(12239903-12239983)
chr7 (45-112)||(1840394-1840462)
[»] scaffold0007 (2 HSPs)
scaffold0007 (21-107)||(217508-217594)
scaffold0007 (19-100)||(215646-215727)
[»] chr1 (2 HSPs)
chr1 (33-106)||(49053554-49053627)
chr1 (45-107)||(49061133-49061195)
[»] chr6 (1 HSPs)
chr6 (19-103)||(28612426-28612508)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 36202952 - 36202784
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaatacaccaa 118  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||    
T  36202952 caattgtcaagcattacaccttttctctaaaaggtctctttttaaccattgcaacttttcaaatatattttaaaaatttctctcacaattaatacaccaa 36202853  T
Q  119 tgttcatgtgtctgtttgtacaattttcttatgcgttcaattgcatataaaggagat-tcatttctgtg 186  Q
    |||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||| |||||||||||    
T  36202852 tgttcatgtgtctggttgtacgattttcttatgtgttcaattgtatataaaggagatgtcatttctgtg 36202784  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 11043066 - 11043139
Alignment:
Q  30 cattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 103  Q
    |||||||| ||||||||||||| ||| | |||||||  || ||||||| |||||||||||||||||||| ||||    
T  11043066 cattacaccttttctctaaaagatctttatttaaccgatgaaacttttcaaatatattttgaaaatttcactca 11043139  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 107
Target Start/End: Complemental strand, 29006286 - 29006218
Alignment:
Q  38 tttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 107  Q
    ||||| |||||||| |||||||| ||  |||||||||||| || ||||||||| ||||||||||||||||    
T  29006286 tttttttctaaaagatctctttt-aattattgcaacttttcaattatattttggaaatttctctcacaat 29006218  T

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Target: chr3 (Bit Score: 68; Significance: 1e-30; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 50914689 - 50914776
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 106  Q
    ||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  50914689 caattgtcaagcattacacctttactctaaaaggtctctatttaaccattgcaacttttcaaatatattttgaaaatttctctaacaa 50914776  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 52653610 - 52653523
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 106  Q
    |||||||||| || ||||| ||||| ||||||||| | | ||||| ||||||||||||  |||||||||||| |||||||||||||||    
T  52653610 caattgtcaaacaatacaccttttcactaaaaggtatttatttaatcattgcaactttccaaatatattttggaaatttctctcacaa 52653523  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 2257455 - 2257521
Alignment:
Q  39 ttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 105  Q
    ||||||||||| ||||||| ||||| ||||||||||||| |||||||||||  |||||||| |||||    
T  2257455 ttttctctaaatggtctctatttaagcattgcaacttttcaaatatatttttgaaatttctatcaca 2257521  T

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Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 23686071 - 23686022
Alignment:
Q  59 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 108  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  23686071 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 23686022  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 24058308 - 24058259
Alignment:
Q  59 tttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 108  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||    
T  24058308 tttaaccattgcaactttccaaatatattttggaaatttctctcacaatt 24058259  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Complemental strand, 33709660 - 33709572
Alignment:
Q  19 caattgtcaagcattacac--tttttctctaaaaggtctctttttaaccattgcaacttttgaaata---tattttgaaaatttctctca 103  Q
    ||||||| |||||||||||  ||||| | ||||||||||||||| |||||||||||||||  |||||   ||||||| ||||||||||||    
T  33709660 caattgtaaagcattacaccttttttttataaaaggtctctttt-aaccattgcaactttccaaatatattattttggaaatttctctca 33709572  T

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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 12729227 - 12729135
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaattaat 111  Q
    |||||||| |||||||||| ||||||||||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||| ||||    
T  12729227 caattgtcgagcattacaccttttctctaaaaggtctctatttaaccattgcaactttccaaatatattttggaaatttctctcacaaataat 12729135  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 105
Target Start/End: Original strand, 28696364 - 28696450
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 105  Q
    ||||||| ||||||||||| ||||||||||||| ||||| |||| ||||||||||||||   | ||||||| |||||| ||||||||    
T  28696364 caattgttaagcattacacattttctctaaaagatctctatttacccattgcaactttttcgaaatattttaaaaattactctcaca 28696450  T

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Target: chr2 (Bit Score: 62; Significance: 5e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 5e-27
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 34681380 - 34681469
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaatt 108  Q
    |||||||||| |||||||||||||||||||||||| | | ||||||||||||||| ||  ||||||||||||||||||||||||||||||    
T  34681380 caattgtcaaacattacactttttctctaaaaggtttatgtttaaccattgcaacattccaaatatattttgaaaatttctctcacaatt 34681469  T

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Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 122915 - 122829
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 105  Q
    ||||||||||||| ||||| |||||||||||| || ||| |||||| |||||||||||| ||||||| |||| ||||||||||||||    
T  122915 caattgtcaagcaatacacattttctctaaaatgtttctatttaactattgcaacttttcaaatatactttggaaatttctctcaca 122829  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 19 - 105
Target Start/End: Complemental strand, 20251233 - 20251147
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcaca 105  Q
    ||||| |||| || ||||||||||||||||||| ||||| |||||| |||||||||||  ||||||||||| |||||||||||||||    
T  20251233 caattatcaaacaatacactttttctctaaaagatctctatttaacaattgcaactttccaaatatattttaaaaatttctctcaca 20251147  T

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Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 48780142 - 48780222
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 100  Q
    |||||||||| ||||| || ||||||||||||| ||| | ||||| ||||||||||||  ||||||||||||||||||||||    
T  48780142 caattgtcaaacattataccttttctctaaaagatct-tgtttaatcattgcaactttccaaatatattttgaaaatttctc 48780222  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 106
Target Start/End: Original strand, 24129623 - 24129710
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 106  Q
    ||||| ||||||| ||||| ||| ||| |||| | || | |||||||||||| |||||  ||||||||||||| ||||||||||||||    
T  24129623 caattatcaagcaatacacctttcctccaaaaagcctatatttaaccattgcgactttctaaatatattttgataatttctctcacaa 24129710  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 1533134 - 1533180
Alignment:
Q  29 gcattacactttttctctaaaaggtctctttttaaccattgcaacttt 76  Q
    ||||||||| |||||||||| ||||||| |||||||||||||||||||    
T  1533134 gcattacaccttttctctaataggtctc-ttttaaccattgcaacttt 1533180  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 1495062 - 1495110
Alignment:
Q  27 aagcattacactttttctctaaaaggtctctttttaaccattgcaacttt 76  Q
    |||| |||||| ||||||||||| |||||| |||||||||||||||||||    
T  1495062 aagctttacaccttttctctaaatggtctc-ttttaaccattgcaacttt 1495110  T

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Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 19 - 100
Target Start/End: Original strand, 12239903 - 12239983
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 100  Q
    ||||||||||||| ||||||||||| ||||||||||| | ||||||||||||||| ||| |||||||||||| |||||||||    
T  12239903 caattgtcaagcaatacactttttcactaaaaggtctttctttaaccattgcaac-tttcaaatatattttggaaatttctc 12239983  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 45 - 112
Target Start/End: Complemental strand, 1840462 - 1840394
Alignment:
Q  45 ctaaaaggtctctttttaaccattgcaacttttgaaat--atattttgaaaatttctctcacaattaata 112  Q
    ||||||||||||| || |||||||||||||||| ||||  ||||||| |||||| |||||||||||||||    
T  1840462 ctaaaaggtctctctt-aaccattgcaacttttcaaatttatattttaaaaattactctcacaattaata 1840394  T

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Target: scaffold0007 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 217594 - 217508
Alignment:
Q  21 attgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 107  Q
    ||||||||| ||||| | ||||||||||||| ||||| |||||||||||||||||||  | ||||||| | ||||||||||||||||    
T  217594 attgtcaagaattacgcattttctctaaaagatctctatttaaccattgcaacttttttattatatttcggaaatttctctcacaat 217508  T

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Target: scaffold0007; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 215727 - 215646
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctc 100  Q
    |||| ||||| |||||||  ||||||  ||||| ||||| ||||||||||||||||||  |||||||||||| |||||||||    
T  215727 caatcgtcaaacattacatattttcttcaaaagatctctatttaaccattgcaactttctaaatatattttggaaatttctc 215646  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 33 - 106
Target Start/End: Complemental strand, 49053627 - 49053554
Alignment:
Q  33 tacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaa 106  Q
    ||||| ||||| ||||||||||| | ||||||||||||||||||  |||||||||||| |||||||||||||||    
T  49053627 tacaccttttcactaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaa 49053554  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 45 - 107
Target Start/End: Complemental strand, 49061195 - 49061133
Alignment:
Q  45 ctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctcacaat 107  Q
    ||||||||||| | ||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  49061195 ctaaaaggtctttatttaaccattgcaactttccaaatatattttggaaatttctctcacaat 49061133  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 28612426 - 28612508
Alignment:
Q  19 caattgtcaagcattacactttttctctaaaaggtctctttttaaccattgcaacttttgaaatatattttgaaaatttctctca 103  Q
    |||||||||| || ||||| ||| |||||||||| |||| |||||||||| ||| |||  |||||||||||| ||||||||||||    
T  28612426 caattgtcaaacaatacacctttgctctaaaaggcctctatttaaccattacaatttt--aaatatattttggaaatttctctca 28612508  T

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