View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3160_low_2 (Length: 448)
Name: NF3160_low_2
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3160_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 227 - 431
Target Start/End: Original strand, 48635149 - 48635353
Alignment:
| Q |
227 |
atatatatatgataacattaaacttaaatatatatgtaattaattttatagttcagtcatctccttggatatacgaacagaggagcatggtggcacagcg |
326 |
Q |
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| T |
48635149 |
atatatatatgataacattaaacttaaatatatatgtaattaattttatagttcagtcatctccttggatatacgaacagaggagcatggtggcacagcg |
48635248 |
T |
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| Q |
327 |
gcgcaagatgtagagacgagcacgttgctccttaaccaaagaagtgcatttgttgctaaaaccaaatccctttctctttctaaggaccttagcatcatcc |
426 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48635249 |
gcgcaagatgtagagacgagcacgttgttccttaaccaaagaagtgcatttgttgctaaaaccaaatccctttctctttctaaggaccttagcatcatcc |
48635348 |
T |
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| Q |
427 |
ataat |
431 |
Q |
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||||| |
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| T |
48635349 |
ataat |
48635353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 6 - 236
Target Start/End: Original strand, 48634912 - 48635130
Alignment:
| Q |
6 |
agcagcacagagggtatccataaaactctcctgtttgtcccctatctatctatctatattagaaagaaaagnnnnnnnccactggcttttggtagcccaa |
105 |
Q |
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| T |
48634912 |
agcaacactgagggtatccataaaactctcctgtttgtcccctatctatctat----attagaaagaaaagaaaaaaaccacgggcttttggtagcccaa |
48635007 |
T |
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| Q |
106 |
atgggtcnnnnnnnntaggggaaggaaggaaggaagtaaggagagactaattaaggtggcagcctgcagtgaagctcatacaacctaactgaacaaacaa |
205 |
Q |
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| T |
48635008 |
atgggtcaaaaaaaataggggaaggaaggaagg--------agagactaattaaggtggcagcctgcagtgaagctcatacaacctaactgaacaaacaa |
48635099 |
T |
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| Q |
206 |
tcaaccagatagaaatggagaatatatatat |
236 |
Q |
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| T |
48635100 |
tcaaccagatagaaatggagaatatatatat |
48635130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 370
Target Start/End: Complemental strand, 8554893 - 8554804
Alignment:
| Q |
281 |
agtcatctccttggatatacgaacagaggagcatggtggcacagcggcgcaagatgtagagacgagcacgttgctccttaaccaaagaag |
370 |
Q |
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|||| |||||||| || ||| |||| || |||||||||||||| || || | ||||||||||||||| |||||||||||||||||||||| |
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| T |
8554893 |
agtcttctccttgaatgtaccaacaaagaagcatggtggcacaacgacgaacgatgtagagacgagctcgttgctccttaaccaaagaag |
8554804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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