View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3160_low_3 (Length: 419)
Name: NF3160_low_3
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3160_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 326
Target Start/End: Original strand, 49258355 - 49258667
Alignment:
| Q |
13 |
aatatgtaatacaacaaataaatgatgatgagtttctgcataaccacgttcactcacacatatataatccactcatctccggtgaagaagaaaaagaagt |
112 |
Q |
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| T |
49258355 |
aatatgaaatacaacaaataaatgatgatgagtttctgcataaccacgttcactcacacatat--aatccactcatctccggtgaagaagaaaaagaagt |
49258452 |
T |
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| Q |
113 |
tttgttagtacaaaagctttaaccgtatgttctggtcaaagtccataaagctcaagtcaatcttctggaccatcgaataagtgaagtgaagaaaatcatc |
212 |
Q |
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| T |
49258453 |
tttgttagtacaaaagctttaaccgtatgttctggtcaaagtccataaagctcaagtcaatcttctggaccatcgaataagtgaagtgaagaaaatcatc |
49258552 |
T |
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| Q |
213 |
tggatcattgttcaaactgtttcatttgggtcattgttcaaagcaatttgtctgaatttctgttcaag-cggttcttctggattacttctcaaatcattg |
311 |
Q |
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| T |
49258553 |
tggatcgttgttcaaactgtttcatttgggtcattgttcaaagcaatttgtctgaatttctgttcaagacggttcttctggattacttctcaaatcattg |
49258652 |
T |
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| Q |
312 |
tgcatggatcaaatc |
326 |
Q |
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| T |
49258653 |
tgcatggatcaaatc |
49258667 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 349 - 403
Target Start/End: Original strand, 49258727 - 49258781
Alignment:
| Q |
349 |
tgtaagaccacttcgtctaatgaactaatcgtctgtactaagacccaacaattat |
403 |
Q |
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| T |
49258727 |
tgtacgaccacttcgtctaatgaactaatcgtctgtactaagacccaacaattat |
49258781 |
T |
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