View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3160_low_5 (Length: 369)
Name: NF3160_low_5
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3160_low_5 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 369
Target Start/End: Complemental strand, 21182815 - 21182465
Alignment:
| Q |
12 |
tgagaagaacattagtggtttggccaggggcaataaggatggtgttagtctcaaaaggtttcacgtaaatagcgtcgacttcaacaactttgagggtgtg |
111 |
Q |
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| T |
21182815 |
tgagaagaacattagtggtttggccaggggcaataaggatggtgttagtctcaaaaggtttcacgtaaatagcgtcggcttcaacaactttgagggtgtg |
21182716 |
T |
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| Q |
112 |
atttgcaacgctgaagaataactcatcatttagtgcagcattgatcaaacgtagaaggtaagtctttccaggcttcacctttagcttgaatgtatctgta |
211 |
Q |
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| T |
21182715 |
atttgcaacgctgaagaataactcatcatttagtgcagcattgatcaaacgtagaaggtaagtctttccaggcttcacctttagcttgaatgtatctgta |
21182616 |
T |
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| Q |
212 |
aagagttgcatcttaaaatgattaaaaccatattgctgataccgtttcataaagaattctatatgcttttgtagaaattggtgtccaatctagtgaatgt |
311 |
Q |
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| T |
21182615 |
aagag-------ttaaaatgattaaaaccatattgctgataccgtttcataaagaattctatatgcttttgtagaaattggtgtctaatctagtgaatgt |
21182523 |
T |
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| Q |
312 |
ccacttgttgagtgcgtgttttagtatttgcttttgtgataaagtggaatactgtatt |
369 |
Q |
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| T |
21182522 |
ccacttgttgagtgcctgttttagtatttgcttttgtgataaagtggaatactgtatt |
21182465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 21205289 - 21205090
Alignment:
| Q |
12 |
tgagaagaacattagtggtttggccaggggcaataaggatggtgttagtctcaaaaggtttcacgtaaatagcgtcgacttcaacaactttgagggtgtg |
111 |
Q |
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| T |
21205289 |
tgagaagaacattagtggtttggccaggggcaatatagatggtgtttgtctcaaaaggtttaacataaatagcatctgcttcaacaactttgagggtatg |
21205190 |
T |
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| Q |
112 |
atttgcaacgctgaagaataactcatcatttagtgcagcattgatcaaacgtagaaggtaagtctttccaggcttcacctttagcttgaatgtatctgta |
211 |
Q |
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| T |
21205189 |
atttgcaatgctgaagaacaactcatcattcagcgcagcgttgatcaaacgtagaaggtaggtttttccaggcttcacctttagtttgaatgtatctgta |
21205090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 12 - 211
Target Start/End: Complemental strand, 21853516 - 21853317
Alignment:
| Q |
12 |
tgagaagaacattagtggtttggccaggggcaataaggatggtgttagtctcaaaaggtttcacgtaaatagcgtcgacttcaacaactttgagggtgtg |
111 |
Q |
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|||||||||||||||||||||| ||||| ||||| ||||| ||||| || |||||||||| | |||| || || ||||||||||| |||| ||||| |
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| T |
21853516 |
tgagaagaacattagtggtttgtccaggtgcaattaggattgtgtttgtgacaaaaggttttgcataaactgcatctgcttcaacaactgtgagagtgtg |
21853417 |
T |
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| Q |
112 |
atttgcaacgctgaagaataactcatcatttagtgcagcattgatcaaacgtagaaggtaagtctttccaggcttcacctttagcttgaatgtatctgta |
211 |
Q |
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| T |
21853416 |
gtttgctatgctgaagaataattcgtcgtttagtgcggcgttgattaaacgaagaaggtaagtctttcttggcttcacctttagcttgaatgtatctgta |
21853317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 103 - 156
Target Start/End: Original strand, 22636196 - 22636249
Alignment:
| Q |
103 |
gagggtgtgatttgcaacgctgaagaataactcatcatttagtgcagcattgat |
156 |
Q |
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| T |
22636196 |
gagggtgtgattagcaatgctaaagaacatctcatcattgagtgcagcattgat |
22636249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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