View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3160_low_6 (Length: 354)
Name: NF3160_low_6
Description: NF3160
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3160_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 336
Target Start/End: Complemental strand, 38022258 - 38021934
Alignment:
| Q |
12 |
atcatcatacattatttgcttgcatctattccttaatatcaacacccttagatgttagatgcaacctataaggaaacataccaccttatcaattcaacaa |
111 |
Q |
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| T |
38022258 |
atcatcatacattatttgcttgcatctattccttaatatcaacacccttagatgttagatgcaacctataaggaaacataccaccttatcaattcaacaa |
38022159 |
T |
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| Q |
112 |
atgcatggaaaaagggacttaagaggcaacgcaagaacatatgatcacacattatacatacaaaagcacacagaaaattcagtataccatagtaattttt |
211 |
Q |
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| T |
38022158 |
atgcatggaaaaagggacttaagaggcaacgcaagaacatatgatcacacattatacatacaaaagcacacagaaaattcagtataccatagtaattttt |
38022059 |
T |
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| Q |
212 |
aaagaacaaagcataatttaaattgatagatcaagttattgacccaattgatagacaacgaagataggtacnnnnnnnnnnnnnncaaagtacttatagg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||||||| |
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| T |
38022058 |
aaagaacaaagcataatttaaattgatagatcaagttattgacccaattgatagacaacaaagatagatacaaaaaaaggaaaaacaaagtacttatagg |
38021959 |
T |
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| Q |
312 |
tgagtcggatagaaccttcccacac |
336 |
Q |
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| T |
38021958 |
tgagtcggatagaaccttcccacac |
38021934 |
T |
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