View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3161_high_16 (Length: 202)
Name: NF3161_high_16
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_high_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 16 - 186
Target Start/End: Original strand, 1422900 - 1423070
Alignment:
| Q |
16 |
caaaggtacgtaattcttaagttgaaaatatttgtaattacaaaactaaaagaggatttatcataaagtatgaaatttgtataatgacataattataagt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1422900 |
caaaggtacgtaattcttaagttgaaaatatttgtaattacaaaactaaaataggatttatcataaagtatgaaatttgtataatgacataattataagt |
1422999 |
T |
|
| Q |
116 |
agatttgacgtagtcactacttgtgttaaatatatttttaaattaatcttgtgatgaacaaatcaaaacaa |
186 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1423000 |
agatttgacgtagtcactacttgtgttaaatatatttttaaattaatcttgtgatgaacaaatcaaaacaa |
1423070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University