View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3161_high_2 (Length: 488)
Name: NF3161_high_2
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_high_2 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 6 - 472
Target Start/End: Original strand, 30235004 - 30235473
Alignment:
| Q |
6 |
agataatactggtgttattgtgaatcctaagggagagatgaaaggtatcatttgttcatttgtctgatatctct--agtaaatactgtttatactt-ggg |
102 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| ||| |
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|
| T |
30235004 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggtatcatttgttcatttgtctgatatctctgtattaaatactgtttatactttggg |
30235103 |
T |
|
| Q |
103 |
acctaatgctcgtgacaatatgtttaggtcttttgtaactgaagtgtaatattaaattaatacacttgcttcagtgccttttggtttttgttacaatttg |
202 |
Q |
| |
|
||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |
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|
| T |
30235104 |
acctaatgctcatgccaatatgtttaggtcttttgtaactgaagtgtaatattaaattaatacacttgcttccgtgccttttggtttttgttacaatgtg |
30235203 |
T |
|
| Q |
203 |
gtaatgcttgggtgttattttttcacaagnnnnnnntcattataccacctgtctttttgttagtttgctacattgttacctttgtaccgttttgtctaat |
302 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30235204 |
gtaatgcttgggtgttattttttcacaagaaaaatatcattataccacctgtctttttgttagtttgctacattgttacctttgtaccgttttgtctaat |
30235303 |
T |
|
| Q |
303 |
cgattcattgctggtatttgattgtgtcttgatggtctatgtcatgctgtttattgtaggttctgctatcaccggtccaattgctaaggaatgtgctgat |
402 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30235304 |
tgattcattgctggtatttgattgtgtcttgatggtctatgtcatgctgtttattgtaggttctgctatcaccggtccaattgctaaggaatgtgctgat |
30235403 |
T |
|
| Q |
403 |
ctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgtttcaagattgcaagt |
472 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30235404 |
ctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgtttcaagattgcaagt |
30235473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 360 - 472
Target Start/End: Original strand, 8425360 - 8425479
Alignment:
| Q |
360 |
aggttctgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgc-------tgccaatgccattgtatgagcgtggat |
452 |
Q |
| |
|
||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||| ||| |||||||||||| |||||| |||||| |
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|
| T |
8425360 |
aggttctgctatcactggaccaattggtaaggagtgtgctgatctttggcctaggattgcaaatgctgccaagtgccaatgccataatatgagtgtggat |
8425459 |
T |
|
| Q |
453 |
tctgtttcaagattgcaagt |
472 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
8425460 |
tctgtttcaagattgcaagt |
8425479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 51
Target Start/End: Original strand, 8425318 - 8425363
Alignment:
| Q |
6 |
agataatactggtgttattgtgaatcctaagggagagatgaaaggt |
51 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8425318 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggt |
8425363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 1e-73; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 6 - 472
Target Start/End: Original strand, 29758696 - 29759154
Alignment:
| Q |
6 |
agataatactggtgttattgtgaatcctaagggagagatgaaaggtatcatttgttcatttgtctgatatctctagtaaatactgtttata--cttggga |
103 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||| | | ||||| ||||||| |
|
|
| T |
29758696 |
agataatgctggtgttattgtgaatcctaagggagaaatgaaaggtatcatttgttcatttttctg-------tagtaaactcagattatatacttggga |
29758788 |
T |
|
| Q |
104 |
cctaatgctcgtgacaatatgtttaggtcttttgtaactgaa------gtgtaatattaaattaatacacttgcttcagtgccttttggtttttgttaca |
197 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||| |||| |||| ||||||||||| ||||||| ||||| |||||||||| | |||||| | |
|
|
| T |
29758789 |
cctaatgctcatgcaaatatgtttagatcttttgtaattgaaattgaagtgtcatattaaattagtacactttcttcattgccttttggctattgttata |
29758888 |
T |
|
| Q |
198 |
atttggtaatgcttgggtgttattttttcacaagnnnnnnntcattataccacctgtctttttgttagtttgctacattgtt--acctttgtaccgtttt |
295 |
Q |
| |
|
|| |||| ||||| ||||||||||||| | ||||||||||||||||||||||||||||| ||| || |||||| || ||||| |
|
|
| T |
29758889 |
atgtggttatgcta-------attttttcacaagaaaaa----aacataccacctgtctttttgttagtttgctaaattattttaccttttgactgtttt |
29758977 |
T |
|
| Q |
296 |
gtctaatcgattcattgctggtatttgatt-gtgtcttgatggtctatgtcatgctgtttattgtaggttctgctatcaccggtccaattgctaaggaat |
394 |
Q |
| |
|
||||||| |||||||||||||||||||||| | || || || | ||||||||| ||| ||||||||||| | |||||| || ||||||| ||||| | |
|
|
| T |
29758978 |
gtctaattgattcattgctggtatttgatttgggttttaata-tatatgtcatgttgtccattgtaggttccgttatcacaggaccaattggaaaggagt |
29759076 |
T |
|
| Q |
395 |
gtgctgatctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgtttcaagattgcaagt |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||| |
|
|
| T |
29759077 |
gtgctgatctttggcctaggattgcaagtgctgccaatgtcattgtatgagtgttgattctgtttcaagattgcaagt |
29759154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 6 - 472
Target Start/End: Original strand, 25153751 - 25154234
Alignment:
| Q |
6 |
agataatactggtgttattgtgaatcctaagggagagatgaaaggtatcatttgttcatttgtctgatatctc--tagtaaatactgtttata--cttgg |
101 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||||||| | | ||||| ||||| |
|
|
| T |
25153751 |
agataattctggtgttattgttaatcctaagggagaaatgaaagttatcatttgttcatttatctgatatctcagtagtaaactcagattatatacttgg |
25153850 |
T |
|
| Q |
102 |
gacctaatgctcgtgacaatatgtttaggtcttttgtaactgaa------gtgtaatattaaattaatacacttgcttcagtgccttttggtttttgtta |
195 |
Q |
| |
|
||||||||||| || ||| ||||||| |||||||||| |||| |||| |||||||| |||||||||| |||||||||||||||| | |||||| |
|
|
| T |
25153851 |
aacctaatgctcatgcaaatgtgtttagatcttttgtaattgaaattgaagtgtcatattaaactaatacactttcttcagtgccttttggctattgtta |
25153950 |
T |
|
| Q |
196 |
caatttggtaatgcttgggtgttattttttcacaagnnnnnnntcattataccac-----ctgtctttttgttagtttgctacattgttacctttgtacc |
290 |
Q |
| |
|
||| |||| |||||| |||| ||||||||||||| ||||| ||||| |||||||||||||||||| ||||||||| ||||||| || |
|
|
| T |
25153951 |
taatgtggttatgcttctgtgtaattttttcacaagaaaaaaa-cattacaccacaccacctgtctttttgttagttttctacattgt-acctttggact |
25154048 |
T |
|
| Q |
291 |
gttttgtctaatcgattcattgctggtatttgatt-gtgtcttgatggtctatgtcatgctgtttattgtaggttctgctatcaccggtccaattgct-- |
387 |
Q |
| |
|
|||||||||||| ||||||||| || ||||||||| | ||||| | |||||| |||| ||| ||||||||||| |||||| || ||||||| | |
|
|
| T |
25154049 |
gttttgtctaattgattcattgttgatatttgatttgggtcttaaca-tctatgccatgttgtccattgtaggttccactatcataggaccaattgattg |
25154147 |
T |
|
| Q |
388 |
--aaggaatgtgctgatctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgtttcaagattgcaagt |
472 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
25154148 |
ataaggagtatgctgatctttggcctaggattgcaagtgctgccaatgccattgcatgagtgttgattctgtttcaagattgcaagt |
25154234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 338 - 465
Target Start/End: Complemental strand, 5690188 - 5690061
Alignment:
| Q |
338 |
tctatgtcatgctgtttattgtaggttctgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgccaatgccat |
437 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5690188 |
tctatgtcatgttgtccattgtaggttccgctatcacaggaccaattggtaaggagtgtgctgatctttggcctaggattgcaagtgctgccaatgccat |
5690089 |
T |
|
| Q |
438 |
tgtatgagcgtggattctgtttcaagat |
465 |
Q |
| |
|
|||||||| || |||||||||||||||| |
|
|
| T |
5690088 |
tgtatgagtgttgattctgtttcaagat |
5690061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 69; Significance: 9e-31; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 369 - 469
Target Start/End: Original strand, 26849176 - 26849276
Alignment:
| Q |
369 |
tatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgtttcaagattgc |
468 |
Q |
| |
|
|||||| || ||||||| ||| ||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
26849176 |
tatcactggaccaattggtaatgaatgtgctgagctttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagattgc |
26849275 |
T |
|
| Q |
469 |
a |
469 |
Q |
| |
|
| |
|
|
| T |
26849276 |
a |
26849276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 360 - 469
Target Start/End: Complemental strand, 22476007 - 22475898
Alignment:
| Q |
360 |
aggttctgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgttt |
459 |
Q |
| |
|
||||||||||||||| || ||||||| || || |||||||| |||||||||| ||||||||||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
22476007 |
aggttctgctatcactggaccaattggcaacgagtgtgctgagctttggcctatgattgcaagtgctgccaataccattgtatgagtgtggattatgttt |
22475908 |
T |
|
| Q |
460 |
caagattgca |
469 |
Q |
| |
|
|||||||||| |
|
|
| T |
22475907 |
caagattgca |
22475898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 399 - 472
Target Start/End: Original strand, 15425483 - 15425556
Alignment:
| Q |
399 |
tgatctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgtttcaagattgcaagt |
472 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||| |
|
|
| T |
15425483 |
tgatatttggcctaggattgcaagtgctgccaatgccattgtatgagtgttgattctgtttcaagatcgcaagt |
15425556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 6 - 51
Target Start/End: Complemental strand, 22476049 - 22476004
Alignment:
| Q |
6 |
agataatactggtgttattgtgaatcctaagggagagatgaaaggt |
51 |
Q |
| |
|
||||||| | || ||||||||||||||||||||||| ||||||||| |
|
|
| T |
22476049 |
agataatgccggcgttattgtgaatcctaagggagaaatgaaaggt |
22476004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 366 - 469
Target Start/End: Original strand, 1530713 - 1530816
Alignment:
| Q |
366 |
tgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgccaatgccattgtatgagcgtggattctgtttcaagat |
465 |
Q |
| |
|
||||||||| || ||||||| ||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||| |
|
|
| T |
1530713 |
tgctatcactggaccaattggtaacgagtgtgctgagctttggcctatgattgcaagtgctgccaatgccattgtatgagtgtggattatgtttcaagat |
1530812 |
T |
|
| Q |
466 |
tgca |
469 |
Q |
| |
|
|||| |
|
|
| T |
1530813 |
tgca |
1530816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 398 - 441
Target Start/End: Original strand, 21921325 - 21921368
Alignment:
| Q |
398 |
ctgatctttggcctaggattgcaagtgctgccaatgccattgta |
441 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
21921325 |
ctgatatttggctaaggattgcaagtgctgccaatgccattgta |
21921368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 355 - 434
Target Start/End: Complemental strand, 39327365 - 39327286
Alignment:
| Q |
355 |
attgtaggttctgctatcaccggtccaattgctaaggaatgtgctgatctttggcctaggattgcaagtgctgccaatgc |
434 |
Q |
| |
|
|||||||| |||||||| || ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
39327365 |
attgtaggatctgctattactggtccaattgcgaaggagtgtgctgatctatggcctaggattgcaagtgctgctaatgc |
39327286 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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