View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3161_high_3 (Length: 425)
Name: NF3161_high_3
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_high_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 250; Significance: 1e-139; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 161 - 414
Target Start/End: Complemental strand, 32695038 - 32694785
Alignment:
| Q |
161 |
gttaaagttggttgataaagtagggatacttggcatgtcatgatagggtttttgagttatggctgtttaagtggttaacgaagttgaatattttggttgg |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
32695038 |
gttaaagttggttgataaagtagggatacttggcatgtcatgatagggtttttgagttatggctgtttaagtggttaacgaagttgaaaattttggttgg |
32694939 |
T |
|
| Q |
261 |
gagtgtggaactctattacttttaacaaaactatatgaatttgtgatttgatttctcttcataaagtacattaaagtgtgaccttcattggctcttcatg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32694938 |
gagtgtggaactctattacttttaacaaaactatatgaatttgtgatttgatttctcttcataaagtacattaaagtgtgaccttcattggctcttcatg |
32694839 |
T |
|
| Q |
361 |
atcctttgtgttgttattggtaccaaagtataatttggagctcttttggttcat |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32694838 |
atcctttgtgttgttattggtaccaaagtataatttggagctcttttggttcat |
32694785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 32695200 - 32695086
Alignment:
| Q |
1 |
caagggtttatataggaga--tactataaggtatgattaataataatataatgtagtgtgacaattaacataatttaataaaagtagtgttttgtgtgag |
98 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32695200 |
caagggtttatataggagagatactataaggtatgattaataataatataatgtagtgtgacaattaacataatttaataaaagtagtgttttgtgtgag |
32695101 |
T |
|
| Q |
99 |
aggaacaagtgcaac |
113 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
32695100 |
aggaacaagtgcaac |
32695086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 339 - 408
Target Start/End: Complemental strand, 32678616 - 32678546
Alignment:
| Q |
339 |
tgaccttcattggctcttcatgatcctttg-tgttgttattggtaccaaagtataatttggagctcttttg |
408 |
Q |
| |
|
||||||| ||||||||||||| | |||||| ||||| |||||||||||| ||||||||||||| ||||||| |
|
|
| T |
32678616 |
tgaccttaattggctcttcattagcctttggtgttggtattggtaccaatgtataatttggaggtcttttg |
32678546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32686203 - 32686143
Alignment:
| Q |
1 |
caagggtttatataggagatactataaggtatgattaataataatataatgtagtgtgacaattaa |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |
|
|
| T |
32686203 |
caagggtttatataggagatactataaggtaagaataata-----ataatgtagtgtgacaattaa |
32686143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 32679137 - 32679107
Alignment:
| Q |
1 |
caagggtttatataggagatactataaggta |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
32679137 |
caagggtttatataggagatactataaggta |
32679107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University