View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3161_high_9 (Length: 250)
Name: NF3161_high_9
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 21056096 - 21055881
Alignment:
| Q |
1 |
cttatccgcaactccaaaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcac |
100 |
Q |
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| T |
21056096 |
cttatccgcaactccaaaaatagaggtatacaatgcatcactggagcacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcac |
21055997 |
T |
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| Q |
101 |
acaaccaaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagc |
200 |
Q |
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| T |
21055996 |
acaaccaaataatatcattcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagc |
21055897 |
T |
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| Q |
201 |
aagaaataaaccagat |
216 |
Q |
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|||||||||||||||| |
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| T |
21055896 |
aagaaataaaccagat |
21055881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 26365866 - 26366064
Alignment:
| Q |
17 |
aaaatagaggtatacaatgcatcactggagtacattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatc |
116 |
Q |
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| T |
26365866 |
aaaaaagaggtatacaatgcatcact--actgcattgttgattcataatccaaagcatcgacttatcaatgaacaaattattacacaactaaataacatc |
26365963 |
T |
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| Q |
117 |
attcatatagggaaattagaaatggggtaaatgcgagtaaatatcatatagtgccggcataaaaaattagatatataaagcagcaagaaataaaccagat |
216 |
Q |
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| T |
26365964 |
attcaaatagataaaccagaaatggggtaaatgccagtaaagatcatattgtgccagcataaaaaatcagacacataaagcagcaaggactaaaccagat |
26366063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 49 - 214
Target Start/End: Original strand, 26363407 - 26363573
Alignment:
| Q |
49 |
cattgttgtttcacagtccaatgcagtgacttatcaaaaaacaaattatcacacaaccaaataatatcattcatatagggaaattagaaatggggtaaat |
148 |
Q |
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||||||||||||||| ||||| | ||| |||||||||| |||||||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||| |
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| T |
26363407 |
cattgttgtttcacaatccaaagaagttacttatcaaagaacaaattattacacaaccaaataatatcattcaaatagataaaccagaaatggggtaaat |
26363506 |
T |
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| Q |
149 |
gcgagtaaatatcatatagtgccggcat-aaaaaattagatatataaagcagcaagaaataaaccag |
214 |
Q |
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|| |||||| ||| |||||||| |||| ||||||| ||| | ||||||||||| ||| |||||||| |
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| T |
26363507 |
gccagtaaagatcgcatagtgccagcataaaaaaatcagacacataaagcagcaggaactaaaccag |
26363573 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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