View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3161_low_12 (Length: 249)

Name: NF3161_low_12
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3161_low_12
NF3161_low_12
[»] chr7 (3 HSPs)
chr7 (1-237)||(4588405-4588633)
chr7 (1-67)||(218726-218792)
chr7 (168-227)||(218544-218603)
[»] chr1 (9 HSPs)
chr1 (1-237)||(30786390-30786618)
chr1 (88-237)||(46887042-46887191)
chr1 (88-237)||(46889063-46889212)
chr1 (27-70)||(43043444-43043487)
chr1 (1-69)||(36729721-36729789)
chr1 (27-70)||(20059851-20059894)
chr1 (109-147)||(26049513-26049551)
chr1 (1-46)||(26049635-26049680)
chr1 (112-156)||(26051544-26051588)
[»] chr4 (9 HSPs)
chr4 (1-237)||(35801896-35802124)
chr4 (1-237)||(54349316-54349544)
chr4 (1-237)||(39162934-39163163)
chr4 (88-197)||(55441280-55441389)
chr4 (1-70)||(46611658-46611727)
chr4 (168-237)||(53019727-53019796)
chr4 (27-70)||(53019926-53019969)
chr4 (162-227)||(46611852-46611917)
chr4 (33-65)||(5555908-5555940)
[»] chr5 (9 HSPs)
chr5 (88-237)||(31813282-31813431)
chr5 (88-197)||(21947100-21947210)
chr5 (88-198)||(20507093-20507202)
chr5 (99-227)||(33270935-33271063)
chr5 (109-171)||(1494708-1494770)
chr5 (99-144)||(19282034-19282079)
chr5 (27-67)||(7014419-7014459)
chr5 (27-70)||(19281968-19282011)
chr5 (1-39)||(1494824-1494862)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-197)||(10834-11022)
[»] chr3 (11 HSPs)
chr3 (88-197)||(49237744-49237853)
chr3 (1-70)||(49021020-49021089)
chr3 (1-70)||(43543451-43543520)
chr3 (103-227)||(17767492-17767616)
chr3 (103-227)||(19068793-19068917)
chr3 (1-70)||(17767335-17767405)
chr3 (1-70)||(19068655-19068725)
chr3 (109-170)||(36518832-36518893)
chr3 (168-227)||(39944788-39944847)
chr3 (11-68)||(25484493-25484550)
chr3 (168-227)||(43543660-43543719)
[»] chr2 (12 HSPs)
chr2 (1-70)||(24574044-24574113)
chr2 (1-70)||(10375092-10375161)
chr2 (1-70)||(27613981-27614050)
chr2 (1-70)||(10377358-10377426)
chr2 (151-237)||(10374598-10374685)
chr2 (168-227)||(10377151-10377210)
chr2 (31-70)||(22615663-22615702)
chr2 (27-65)||(19259060-19259098)
chr2 (168-226)||(19259213-19259271)
chr2 (197-227)||(27614212-27614242)
chr2 (194-227)||(11105390-11105423)
chr2 (34-70)||(36561850-36561886)
[»] chr8 (6 HSPs)
chr8 (1-70)||(12231399-12231468)
chr8 (1-70)||(33327854-33327923)
chr8 (1-69)||(375700-375768)
chr8 (1-70)||(411226-411295)
chr8 (5-60)||(31518564-31518619)
chr8 (113-170)||(411123-411180)
[»] scaffold0007 (3 HSPs)
scaffold0007 (4-227)||(197839-198054)
scaffold0007 (99-170)||(198480-198550)
scaffold0007 (5-70)||(198575-198640)


Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 4588633 - 4588405
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgnnnnnnnnnnnnnnnnngactttgtagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||    
T  4588633 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgatatatata--------gactttgtagaaa 4588542  T
Q  101 aaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatg 200  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4588541 aaactaccaataacttcctatacttagagccctacacttggcataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatg 4588442  T
Q  201 cgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    | |||||||||||||||| ||||||||||||||||||    
T  4588441 cactccaattgcaacttcaaattatttatgtttgtct 4588405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 218792 - 218726
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaa 67  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||    
T  218792 ctcccatggcgtgggtgttacaaagttttcagaaatcaagaaaccaacccagtgttattattacaaa 218726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 218603 - 218544
Alignment:
Q  168 cttcaataaacttcaggcttgtttgtcaccatgcgctccaattgcaacttcgaattattt 227  Q
    |||||||  ||||||| |||||||  | ||||||||||||||||||| ||||||||||||    
T  218603 cttcaatgcacttcagccttgtttcccgccatgcgctccaattgcaatttcgaattattt 218544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 30786390 - 30786618
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgnnnnnnnnnnnnnnnnngactttgtagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||||||| |||||    
T  30786390 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgatatatata--------gactttgaagaaa 30786481  T
Q  101 aaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatg 200  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30786482 aaactaccaataacttcctatacttagagccctacacttggcataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcactatg 30786581  T
Q  201 cgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    | |||||||||||||||||||||||||||||||||||    
T  30786582 cactccaattgcaacttcgaattatttatgtttgtct 30786618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 46887042 - 46887191
Alignment:
Q  88 gactttgtagaaaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggctt 187  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46887042 gactttgaagaaaaaactaccaataacttcctatacttagagccctacacttggcataatcacaagacattaaaaaataacttcaataaacttcaggctt 46887141  T
Q  188 gtttgtcaccatgcgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46887142 gtttgtcaccatacgctccaattgcaacttcgaattatttatgtttgtct 46887191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 88 - 237
Target Start/End: Original strand, 46889063 - 46889212
Alignment:
Q  88 gactttgtagaaaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggctt 187  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  46889063 gactttgaagaaaaaactaccaataacttcctatacttagagccctacacttggcataatcacaagacattaaaaaataacttcaataaacttcaggctt 46889162  T
Q  188 gtttgtcaccatgcgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    |||||||||||| |||||||||||||| ||| ||||||||||||||||||    
T  46889163 gtttgtcaccatacgctccaattgcaatttcaaattatttatgtttgtct 46889212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 43043487 - 43043444
Alignment:
Q  27 tttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  43043487 tttcagaaatcaagaaaccaacccattgtaattattacaaactg 43043444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 36729789 - 36729721
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaact 69  Q
    ||||||||| |||||||||||  |||||||| ||||||||||||||||   ||||| ||||||||||||    
T  36729789 ctcccatggtgtgggtgttactaagttttcaaaaatcaagaaaccaacattttgttcttattacaaact 36729721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 20059851 - 20059894
Alignment:
Q  27 tttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||| ||||||||||||  |||||||||||||||||||    
T  20059851 tttcagaaattaagaaaccaaccatttgttattattacaaactg 20059894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 147
Target Start/End: Complemental strand, 26049551 - 26049513
Alignment:
Q  109 aataacttcctatacttagagccctacacttgacataat 147  Q
    |||||||||||||| |||| |||||||||||||||||||    
T  26049551 aataacttcctatatttagggccctacacttgacataat 26049513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 26049680 - 26049635
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaacca 46  Q
    ||||| |||||||||||||||| |||||| |||||||| |||||||    
T  26049680 ctcccttggcgtgggtgttacaaagtttttagaaatcatgaaacca 26049635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 156
Target Start/End: Complemental strand, 26051588 - 26051544
Alignment:
Q  112 aacttcctatacttagagccctacacttgacataatcacaagaca 156  Q
    ||||||||||||||||||||| ||||||| ||||||  |||||||    
T  26051588 aacttcctatacttagagcccgacacttggcataattgcaagaca 26051544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 6e-86; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 35802124 - 35801896
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgnnnnnnnnnnnnnnnnngactttgtagaaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||                 |||||||||||||    
T  35802124 ctcctatggcgtgggtgttacagagttttcagaaatcaagaaatcaacccattgttatcattacaaactgatatatata--------gactttgtagaaa 35802033  T
Q  101 aaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatg 200  Q
    |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35802032 aaactatcaataacttcctatacttagagccctacacttggcataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatg 35801933  T
Q  201 cgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  35801932 cgctccaattgcaacttcgaattatttatgtttgtct 35801896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 54349316 - 54349544
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgnnnnnnnnnnnnnnnnngactttgtagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 ||| || ||||||    
T  54349316 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgatatatata--------gaccttatagaaa 54349407  T
Q  101 aaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatg 200  Q
    ||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  54349408 aaactaccaataacttcctatacttagagccttacatttggcataatcacaagacattaaaaaataacttcaataaactttaggcttgtttgtcaccatg 54349507  T
Q  201 cgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  54349508 cgctccaattgcaacttcgaattatttatgtttgtct 54349544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 39163163 - 39162934
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaac-ccattgttattattacaaactgnnnnnnnnnnnnnnnnngactttgtagaa 99  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||                 ||||||||||||    
T  39163163 ctcccatggcgtgggtgttacagagtttttagaaatcaagaaaccaacaccattgttattattacaaactgatatatata--------gactttgtagaa 39163072  T
Q  100 aaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccat 199  Q
    |||||||||||||||||| ||||||||||||| |||||||  ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  39163071 aaaactaccaataacttcgtatacttagagccatacacttagcataatcacaagacattaaaaaatagcttcaataaacttcaggcttgtttgtcaccat 39162972  T
Q  200 gcgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    || ||||||||||||||||||||||||||||| |||||    
T  39162971 gcactccaattgcaacttcgaattatttatgtctgtct 39162934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 55441389 - 55441280
Alignment:
Q  88 gactttgtagaaaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggctt 187  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  55441389 gactttgcagaaaaaactaccaataacttcctatacttagagccctacacttggcataatcacaagacattaaaaaataacttcaataaacttcaagctt 55441290  T
Q  188 gtttgtcacc 197  Q
    ||||||||||    
T  55441289 gtttgtcacc 55441280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 46611658 - 46611727
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  46611658 ctcccatggaatgggtgttacagagttttcagaaatcaagaaaccaaccaattgttattattacaaactg 46611727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 53019796 - 53019727
Alignment:
Q  168 cttcaataaacttcaggcttgtttgtcaccatgcgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    |||||||  ||||||| |||||||  | |||||||||||||||||| |||||||||||||||||||||||    
T  53019796 cttcaatgcacttcagccttgtttcccgccatgcgctccaattgcagcttcgaattatttatgtttgtct 53019727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 70
Target Start/End: Complemental strand, 53019969 - 53019926
Alignment:
Q  27 tttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||| ||||||||||||||||| |||||||||||||||||||    
T  53019969 tttcaggaatcaagaaaccaaccccttgttattattacaaactg 53019926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 46611852 - 46611917
Alignment:
Q  162 aaataacttcaataaacttcaggcttgtttgtcaccatgcgctccaattgcaacttcgaattattt 227  Q
    |||||||||||||  ||||||| |||||||    || |||||||||||||||||||||||||||||    
T  46611852 aaataacttcaatgcacttcagccttgtttccttccgtgcgctccaattgcaacttcgaattattt 46611917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 65
Target Start/End: Complemental strand, 5555940 - 5555908
Alignment:
Q  33 aaatcaagaaaccaacccattgttattattaca 65  Q
    ||||||||||||||||| |||||||||||||||    
T  5555940 aaatcaagaaaccaaccaattgttattattaca 5555908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 88 - 237
Target Start/End: Complemental strand, 31813431 - 31813282
Alignment:
Q  88 gactttgtagaaaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggctt 187  Q
    ||||||| || |||||||||||||||||||||  ||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  31813431 gactttgcaggaaaaactaccaataacttccttcactaagagccctacacttggcataatcacaagacattaaaaaataacttcaataaacttcaggctt 31813332  T
Q  188 gtttgtcaccatgcgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31813331 gtttgtcaccatgcgctccaattgcaacttcgaattatttatgtttgtct 31813282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 21947210 - 21947100
Alignment:
Q  88 gactttgtagaaaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaa-aaaataacttcaataaacttcaggct 186  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||    
T  21947210 gactttgcagaaaaaactaccaataacttcctatacttagagccctacacttggcataattacaagacattaaaaaaataacttcaataaacttcaggct 21947111  T
Q  187 tgtttgtcacc 197  Q
    |||||||||||    
T  21947110 tgtttgtcacc 21947100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 20507202 - 20507093
Alignment:
Q  88 gactttgtagaaaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggctt 187  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| ||||||||| ||||||||||||| |||    
T  20507202 gactttgcaggaaaaactaccaataacttcctatacttagagccctacacttggcataattacaagacatta-aaaataactgcaataaacttcagcctt 20507104  T
Q  188 gtttgtcacca 198  Q
    |||||||||||    
T  20507103 gtttgtcacca 20507093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 227
Target Start/End: Complemental strand, 33271063 - 33270935
Alignment:
Q  99 aaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcacca 198  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||| |||||||| || ||||||||||  ||  |||| || |||||||    | |    
T  33271063 aaaaactaccaataacttcctatacttagagccatacacttggcataattacaagacactagaaaataactttcatgcactttagccttgtttcctgcta 33270964  T
Q  199 tgcgctccaattgcaacttcgaattattt 227  Q
    |||||||||||||||||||| ||||||||    
T  33270963 tgcgctccaattgcaacttcaaattattt 33270935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 109 - 171
Target Start/End: Complemental strand, 1494770 - 1494708
Alignment:
Q  109 aataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttc 171  Q
    ||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||||||||||    
T  1494770 aataacttcctttacttagagccctacacttgacataattacaagacatcataaaataacttc 1494708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 19282034 - 19282079
Alignment:
Q  99 aaaaactaccaataacttcctatacttagagccctacacttgacat 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  19282034 aaaaactaccaataacttcctatacttagagccctacacttgacat 19282079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 7014419 - 7014459
Alignment:
Q  27 tttcagaaatcaagaaaccaacccattgttattattacaaa 67  Q
    |||||||||||||||||||||||| ||||| ||||||||||    
T  7014419 tttcagaaatcaagaaaccaaccccttgttcttattacaaa 7014459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 19281968 - 19282011
Alignment:
Q  27 tttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||||||||||||||||| || || |||||||||||||    
T  19281968 tttcagaaatcaagaaaccaaccccttattcttattacaaactg 19282011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 1494862 - 1494824
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaa 39  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  1494862 ctcccatggcgtgggtgttgcggagttttcagaaatcaa 1494824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 10834 - 11022
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgnnnnnnnnnnnnnnnnngactttgtagaaa 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||                 |||||||||||||    
T  10834 ctcccatggcgtgggtgttacagagttttctgaaatcaagaaaccaacccattgttattattacaaactgatatatata--------gactttgtagaaa 10925  T
Q  101 aaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcacc 197  Q
    |||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10926 aaactaccaacaacttcctatacttagagccctacacttggcataatcacaagacattaaaaaataacttcaataaacttcaagcttgtttgtcacc 11022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 102; Significance: 9e-51; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 88 - 197
Target Start/End: Complemental strand, 49237853 - 49237744
Alignment:
Q  88 gactttgtagaaaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggctt 187  Q
    ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49237853 gactttgcagtaaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggctt 49237754  T
Q  188 gtttgtcacc 197  Q
    ||||||||||    
T  49237753 gtttgtcacc 49237744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 49021020 - 49021089
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  49021020 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaaccaattgttattattacaaactg 49021089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 43543451 - 43543520
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    ||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||    
T  43543451 ctcccatggcgtgggtgttacagagtttttaaaaatcaagaaaccaactcattgttattattacaaactg 43543520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 17767492 - 17767616
Alignment:
Q  103 actaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatgcg 202  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||| ||||||||||  ||  || ||||  |||||||   ||||| |    
T  17767492 actacaaataacttcctatacttagagccctacatttggcataattataagacattagaaaataactttcatgcacctcagcattgtttgctcccatgtg 17767591  T
Q  203 ctccaattgcaacttcgaattattt 227  Q
    |||||||||| ||||| ||||||||    
T  17767592 ctccaattgccacttcaaattattt 17767616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 227
Target Start/End: Original strand, 19068793 - 19068917
Alignment:
Q  103 actaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatgcg 202  Q
    ||||| |||||||||||||||||||||||||||| ||| |||||| | ||||||||| ||||||||||  ||  || ||||  |||||||   ||||| |    
T  19068793 actacaaataacttcctatacttagagccctacatttggcataattataagacattagaaaataactttcatgcacctcagcattgtttgctcccatgtg 19068892  T
Q  203 ctccaattgcaacttcgaattattt 227  Q
    |||||||||| ||||| ||||||||    
T  19068893 ctccaattgccacttcaaattattt 19068917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 17767335 - 17767405
Alignment:
Q  1 ctcccatggcgtgggtgttacagagtttt-cagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||||||||||||| | | |||| ||||||||||||||||||||| || || |||||||||||||    
T  17767335 ctcccatggcgtgggtgttataaattttttcagaaatcaagaaaccaaccctttattcttattacaaactg 17767405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 19068655 - 19068725
Alignment:
Q  1 ctcccatggcgtgggtgttacagagtttt-cagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||||||||||||| | | |||| ||||||||||||||||||||| || || |||||||||||||    
T  19068655 ctcccatggcgtgggtgttataaattttttcagaaatcaagaaaccaaccctttattcttattacaaactg 19068725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 109 - 170
Target Start/End: Original strand, 36518832 - 36518893
Alignment:
Q  109 aataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataactt 170  Q
    |||||||||||||||||||||||||||||||  |||||| ||||||||  | ||||||||||    
T  36518832 aataacttcctatacttagagccctacacttagcataattacaagacaccagaaaataactt 36518893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 39944788 - 39944847
Alignment:
Q  168 cttcaataaacttcaggcttgtttgtcaccatgcgctccaattgcaacttcgaattattt 227  Q
    |||||||  ||||||| |||||||  ||||||||||||||||| ||||||||||||||||    
T  39944788 cttcaatgcacttcagccttgtttcccaccatgcgctccaatttcaacttcgaattattt 39944847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 68
Target Start/End: Original strand, 25484493 - 25484550
Alignment:
Q  11 gtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaac 68  Q
    |||||||| | |||||||| |||||||||||||||||||  ||||| |||||||||||    
T  25484493 gtgggtgtcatagagtttttagaaatcaagaaaccaaccatttgttcttattacaaac 25484550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 227
Target Start/End: Original strand, 43543660 - 43543719
Alignment:
Q  168 cttcaataaacttcaggcttgtttgtcaccatgcgctccaattgcaacttcgaattattt 227  Q
    |||||||  |||| || |||||||  |||| |||||||||||||||||||||||||||||    
T  43543660 cttcaatgcactttagccttgtttcccaccgtgcgctccaattgcaacttcgaattattt 43543719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 24574044 - 24574113
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24574044 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 24574113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10375161 - 10375092
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  10375161 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaaccccttgttattattacaaactg 10375092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 27613981 - 27614050
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||    
T  27613981 ctcccatggcgtgggtgttacagatttttcagaaatcaagaaaccaaccaattgttataattacaaactg 27614050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 10377426 - 10377358
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||    
T  10377426 ctcccatggcgtgggtattacagagttttcagaaatcaagaaactaaccc-ttgttattattacaaactg 10377358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 151 - 237
Target Start/End: Complemental strand, 10374685 - 10374598
Alignment:
Q  151 aagacattaaaaaataa-cttcaataaacttcaggcttgtttgtcaccatgcgctccaattgcaacttcgaattatttatgtttgtct 237  Q
    |||||| || ||||||| |||||||  |||| || |||||||  |||||||||||||||||||||||||||||||||| | |||||||    
T  10374685 aagacactagaaaataatcttcaatgcactttagtcttgtttcccaccatgcgctccaattgcaacttcgaattatttctctttgtct 10374598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 168 - 227
Target Start/End: Complemental strand, 10377210 - 10377151
Alignment:
Q  168 cttcaataaacttcaggcttgtttgtcaccatgcgctccaattgcaacttcgaattattt 227  Q
    |||||||  |||| || |||||||  ||||||||||||||||||||||||||||||||||    
T  10377210 cttcaatgcactttagccttgtttcccaccatgcgctccaattgcaacttcgaattattt 10377151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 70
Target Start/End: Complemental strand, 22615702 - 22615663
Alignment:
Q  31 agaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  22615702 agaaatcaagaaaccaacctattgttattattacaaactg 22615663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 65
Target Start/End: Original strand, 19259060 - 19259098
Alignment:
Q  27 tttcagaaatcaagaaaccaacccattgttattattaca 65  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  19259060 tttcagaaatcaagaaaccaacccattgtaattattaca 19259098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 19259213 - 19259271
Alignment:
Q  168 cttcaataaacttcaggcttgtttgtcaccatgcgctccaattgcaacttcgaattatt 226  Q
    |||||||  ||||||| |||||||  | |||||||||||||||||||||| ||||||||    
T  19259213 cttcaatgcacttcagtcttgttttccgccatgcgctccaattgcaactttgaattatt 19259271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 227
Target Start/End: Original strand, 27614212 - 27614242
Alignment:
Q  197 catgcgctccaattgcaacttcgaattattt 227  Q
    |||||||||||||||||||||||||||||||    
T  27614212 catgcgctccaattgcaacttcgaattattt 27614242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 227
Target Start/End: Original strand, 11105390 - 11105423
Alignment:
Q  194 caccatgcgctccaattgcaacttcgaattattt 227  Q
    |||||| |||||||||||||||||||||||||||    
T  11105390 caccatacgctccaattgcaacttcgaattattt 11105423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 36561886 - 36561850
Alignment:
Q  34 aatcaagaaaccaacccattgttattattacaaactg 70  Q
    ||||||||||||||| | |||||||||||||||||||    
T  36561886 aatcaagaaaccaactccttgttattattacaaactg 36561850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 12231468 - 12231399
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  12231468 ctcccatggcgtgggtgttacagagttttcaaaaatcaagaaaccaacccattgttattattacaaactg 12231399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 33327923 - 33327854
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||    
T  33327923 ctcccatggcgtgggtgttacaaagtcttcagaaatcaagaaaccaacccattgttattattacaaactg 33327854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 375768 - 375700
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaact 69  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||| || ||||| ||||||||||||    
T  375768 ctcccatggcgtgggtgttagagagttttcagaaatcaagaaaacaatcccttgttcttattacaaact 375700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 411295 - 411226
Alignment:
Q  1 ctcccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    |||||||||| |||||||||| ||| |||||||||||||| |  | |||| ||||| |||||||||||||    
T  411295 ctcccatggcctgggtgttaccgagatttcagaaatcaaggattccaccctttgttcttattacaaactg 411226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 31518619 - 31518564
Alignment:
Q  5 catggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttatta 60  Q
    |||||||||| |||| ||||||||| |||||||||||||  |||| ||||||||||    
T  31518619 catggcgtggatgttgcagagttttgagaaatcaagaaattaaccaattgttatta 31518564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 170
Target Start/End: Complemental strand, 411180 - 411123
Alignment:
Q  113 acttcctatacttagagccctacacttgacataatcacaagacattaaaaaataactt 170  Q
    ||||| ||||||||||| |||||| ||| |||||| |||||||| || ||||||||||    
T  411180 acttcttatacttagagtcctacatttggcataattacaagacactagaaaataactt 411123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 4 - 227
Target Start/End: Complemental strand, 198054 - 197839
Alignment:
Q  4 ccatggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactgnnnnnnnnnnnnnnnnngactttgtagaaaaaa 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||                  ||| ||| |  |||||    
T  198054 ccatggcgtgggtgttacagagttttcagaaatcaagaaaccaaccctttgttcttattacaaact--------aatatatatagaccttgcatgaaaaa 197963  T
Q  104 ctaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataacttcaataaacttcaggcttgtttgtcaccatgcgc 203  Q
    |||||| ||||||| |||||||||||||||||||||| ||||||  |||||||||| ||||||||||  ||  ||||||  |||||||    |||| |||    
T  197962 ctaccattaacttcatatacttagagccctacacttggcataatttcaagacattagaaaataactttcatgcacttcaaccttgtttcctgccatacgc 197863  T
Q  204 tccaattgcaacttcgaattattt 227  Q
    |||||||| |||||| ||||||||    
T  197862 tccaattgaaacttcaaattattt 197839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 99 - 170
Target Start/End: Complemental strand, 198550 - 198480
Alignment:
Q  99 aaaaactaccaataacttcctatacttagagccctacacttgacataatcacaagacattaaaaaataactt 170  Q
    ||||||||||||||||||||||||||||||| | |||||||| |||||| |||||||| || ||||||||||    
T  198550 aaaaactaccaataacttcctatacttagag-cgtacacttggcataattacaagacactagaaaataactt 198480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 5 - 70
Target Start/End: Complemental strand, 198640 - 198575
Alignment:
Q  5 catggcgtgggtgttacagagttttcagaaatcaagaaaccaacccattgttattattacaaactg 70  Q
    ||||| |||||||||||| || ||| |||||||||||||||||||| ||||| |||||||||||||    
T  198640 catggtgtgggtgttacatagattttagaaatcaagaaaccaaccctttgttcttattacaaactg 198575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University