View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3161_low_13 (Length: 249)
Name: NF3161_low_13
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 21056532 - 21056323
Alignment:
| Q |
1 |
ctcaaattaggcaacagtagaaccaagatcaccccttccattcttgcttaaagtccagttcctgcaaaatttatttccacggattctgcattttctatcc |
100 |
Q |
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| T |
21056532 |
ctcaaattaggcaacagtagaaccaagatcaccccttccattcttgcttaaagtccagttcctgcaaaatttatttccacggattctgcattttctatcc |
21056433 |
T |
|
| Q |
101 |
ctcaattttattatagtcaaagcagaattctccagataatttcaccaaatcaatagtgcacaatccttgtgcaacacatgagaatttgacttctatttca |
200 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
21056432 |
ctcaattttattatagtcaaagcagaattctcgagataatttcaccaaatcaatagtgcacaatccttgtgaaccacatgagaatttgacttctatttca |
21056333 |
T |
|
| Q |
201 |
ttattatata |
210 |
Q |
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|||||||||| |
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| T |
21056332 |
ttattatata |
21056323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 26365442 - 26365585
Alignment:
| Q |
1 |
ctcaaattaggcaacagtagaaccaagatcaccccttccattcttgcttaaagtccagttcctgcaaaatttatttccacggattctgcattttctatcc |
100 |
Q |
| |
|
|||||||||||||||||| | ||||||||||| ||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||| |
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| T |
26365442 |
ctcaaattaggcaacagttggaccaagatcactccttccattcttgcttaaagttcagttcctgcaaatttaat---------ttctgcattttctatcc |
26365532 |
T |
|
| Q |
101 |
c-tcaattttattatagtcaaagcagaattctccagataatttcaccaaatca |
152 |
Q |
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| | || ||||| || |||||||| |||| |||||||||| ||||||||||| |
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| T |
26365533 |
caactatcttattgtattcaaagcaaaattttccagataatatcaccaaatca |
26365585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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