View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3161_low_14 (Length: 237)
Name: NF3161_low_14
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 15 - 237
Target Start/End: Original strand, 29427789 - 29428005
Alignment:
| Q |
15 |
aagttgtttatccaaaatgggccatgatctccatacttaaaaatctatctcaatattgaagcacataggaacataatatagaacaatcatatcacaaaaa |
114 |
Q |
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| T |
29427789 |
aagttgtttatccaaaatgggccatgatctccatacttaaaaatctatctcaatattgaagcacataggaacataatatagaacaatcatatcacaaaaa |
29427888 |
T |
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| Q |
115 |
atgacattacattacattaccattacatactgaaaaacaataatagaattgaattgatgtgttgattataaaagcatgcatacctacatgtccagatata |
214 |
Q |
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| T |
29427889 |
atgacattacattacatt------acatactgaaaaacaataatagaattgaattgatgtgttgattataaaagaatgcatacctacatgtccagatata |
29427982 |
T |
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| Q |
215 |
agaatccataaacaaggatccct |
237 |
Q |
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| T |
29427983 |
agaatccataaacaaggatccct |
29428005 |
T |
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