View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3161_low_15 (Length: 218)
Name: NF3161_low_15
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 6 - 202
Target Start/End: Complemental strand, 25524916 - 25524720
Alignment:
| Q |
6 |
agcagcacagagcacagagatctcatgagctttcttgagtaaaccagatcttctctttgaaaaagttacttgcctattgatcttgttctcaatcttcttc |
105 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25524916 |
agcatcacaaagcacagagatctcatgagctttcttgagtaaaccagatcttctctttgaaaaagttacttgcctattgatcttgttctcaatcttcttc |
25524817 |
T |
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| Q |
106 |
aattgcacccttcctctccccataatatatattatgtatannnnnnnnnnnnnnaattattaaattctataaacttctatgttaagtatgtgaatag |
202 |
Q |
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| T |
25524816 |
aattgcacccttcctctccccataatatatattatgtatatttttttcttttttaattattaaattctataaacttctatgttaagtatgtgaatag |
25524720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 6 - 128
Target Start/End: Complemental strand, 45690376 - 45690254
Alignment:
| Q |
6 |
agcagcacagagcacagagatctcatgagctttcttgagtaaaccagatcttctctttgaaaaagttacttgcctattgatcttgttctcaatcttcttc |
105 |
Q |
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|||| |||| || ||||||||||| || |||||||| | |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| ||||| |
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| T |
45690376 |
agcatcacaaagaacagagatctcttgtgctttcttcaacaaaccagaccttctctttgaaaaagtgacttgtctattgatcttgttctcaatcctcttc |
45690277 |
T |
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| Q |
106 |
aattgcacccttcctctccccat |
128 |
Q |
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| T |
45690276 |
aactgcactcttcccctccccat |
45690254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 46039659 - 46039718
Alignment:
| Q |
33 |
agctttcttgagtaaaccagatcttctctttgaaaaagttacttgcctattgatcttgtt |
92 |
Q |
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| T |
46039659 |
agctttcttcaacaaaccacttcttctctttgaaaatgttacttgtctattgatcttgtt |
46039718 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 128
Target Start/End: Original strand, 12811969 - 12812091
Alignment:
| Q |
6 |
agcagcacagagcacagagatctcatgagctttcttgagtaaaccagatcttctctttgaaaaagttacttgcctattgatcttgttctcaatcttcttc |
105 |
Q |
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|||| ||||||| ||||| | |||| |||||||||||| |||||| |||||| ||||| |||||||| |||| || || |||||||| || ||||| |
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| T |
12811969 |
agcatcacagagaacagacagttcataagctttcttgagcaaaccatttcttctttttgagaaagttacctgccggtttattttgttctctattctcttc |
12812068 |
T |
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| Q |
106 |
aattgcacccttcctctccccat |
128 |
Q |
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|||| || |||||||| ||||| |
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| T |
12812069 |
aattcaactcttcctcttcccat |
12812091 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 27527504 - 27527614
Alignment:
| Q |
6 |
agcagcacagagcacagagatctcatgagctttcttgagtaaaccagatcttctctttgaaaaagttacttgcctattgatcttgttctcaatcttcttc |
105 |
Q |
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|||| |||| || |||||||||||||||||||||||||| | |||| ||| || || || ||||| || || | |||||||||||| || ||| ||||| |
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| T |
27527504 |
agcatcacaaagaacagagatctcatgagctttcttgagaagtccagctctccttttagagaaagtaacctgacgattgatcttgttttctatcctcttc |
27527603 |
T |
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| Q |
106 |
aattgcaccct |
116 |
Q |
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|| || ||||| |
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| T |
27527604 |
aactgaaccct |
27527614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 22611545 - 22611504
Alignment:
| Q |
54 |
tcttctctttgaaaaagttacttgcctattgatcttgttctc |
95 |
Q |
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|||||||||||| || |||||||||||||||||||| ||||| |
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| T |
22611545 |
tcttctctttgagaatgttacttgcctattgatcttattctc |
22611504 |
T |
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