View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3161_low_5 (Length: 366)

Name: NF3161_low_5
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3161_low_5
NF3161_low_5
[»] chr3 (30 HSPs)
chr3 (147-366)||(41880615-41880834)
chr3 (18-133)||(41883076-41883192)
chr3 (19-132)||(3456161-3456274)
chr3 (18-81)||(11347364-11347427)
chr3 (18-81)||(47738201-47738264)
chr3 (17-81)||(3574432-3574496)
chr3 (18-81)||(22426250-22426313)
chr3 (18-81)||(30385107-30385170)
chr3 (18-81)||(33113889-33113952)
chr3 (18-133)||(3137268-3137383)
chr3 (18-81)||(8320489-8320553)
chr3 (17-81)||(19650805-19650869)
chr3 (18-81)||(3089513-3089576)
chr3 (18-81)||(8361951-8362014)
chr3 (18-81)||(40327921-40327984)
chr3 (18-81)||(42297450-42297513)
chr3 (18-81)||(42297960-42298023)
chr3 (18-133)||(33145808-33145923)
chr3 (18-133)||(37522149-37522264)
chr3 (18-78)||(6041980-6042040)
chr3 (18-81)||(2754813-2754876)
chr3 (18-81)||(9796935-9796998)
chr3 (18-81)||(33839627-33839690)
chr3 (18-73)||(34482824-34482879)
chr3 (268-303)||(44459367-44459402)
chr3 (18-81)||(48161001-48161064)
chr3 (18-81)||(24343643-24343706)
chr3 (18-81)||(41224329-41224392)
chr3 (18-81)||(36864937-36864996)
chr3 (49-81)||(30385528-30385560)
[»] chr1 (22 HSPs)
chr1 (147-366)||(50316199-50316418)
chr1 (18-81)||(25463772-25463835)
chr1 (18-81)||(40215084-40215147)
chr1 (18-81)||(44094794-44094857)
chr1 (263-357)||(32957119-32957213)
chr1 (18-133)||(19015500-19015615)
chr1 (18-133)||(36966562-36966677)
chr1 (16-81)||(44690935-44691000)
chr1 (18-81)||(6883583-6883646)
chr1 (18-81)||(40273798-40273861)
chr1 (18-133)||(41876296-41876411)
chr1 (18-77)||(3559713-3559772)
chr1 (18-81)||(27523161-27523224)
chr1 (18-81)||(51621026-51621085)
chr1 (18-79)||(9910201-9910262)
chr1 (18-79)||(33786543-33786604)
chr1 (18-133)||(37821688-37821803)
chr1 (18-133)||(51737601-51737716)
chr1 (18-81)||(18404538-18404601)
chr1 (18-81)||(20305037-20305100)
chr1 (18-81)||(32000173-32000236)
chr1 (18-81)||(52329365-52329427)
[»] chr7 (19 HSPs)
chr7 (147-366)||(11670437-11670656)
chr7 (18-78)||(15329369-15329429)
chr7 (18-81)||(18037074-18037137)
chr7 (18-133)||(42611907-42612022)
chr7 (18-78)||(15238478-15238538)
chr7 (18-81)||(3962075-3962138)
chr7 (18-81)||(24395068-24395131)
chr7 (18-81)||(37476986-37477049)
chr7 (18-81)||(48880833-48880896)
chr7 (18-133)||(4974589-4974704)
chr7 (18-81)||(15577756-15577819)
chr7 (18-81)||(25167756-25167819)
chr7 (18-81)||(34482931-34482993)
chr7 (18-81)||(42696179-42696242)
chr7 (18-81)||(45637808-45637871)
chr7 (18-81)||(30848665-30848728)
chr7 (18-78)||(35444654-35444714)
chr7 (18-81)||(20010004-20010067)
chr7 (18-81)||(29737235-29737298)
[»] chr2 (18 HSPs)
chr2 (18-81)||(27847728-27847791)
chr2 (18-81)||(3989172-3989235)
chr2 (18-81)||(9293482-9293545)
chr2 (18-133)||(7475362-7475477)
chr2 (18-133)||(23267916-23268031)
chr2 (18-133)||(33380303-33380418)
chr2 (18-81)||(16767378-16767441)
chr2 (18-81)||(31174740-31174803)
chr2 (18-81)||(35160853-35160916)
chr2 (18-81)||(21936177-21936241)
chr2 (18-81)||(10661983-10662046)
chr2 (18-81)||(14941273-14941335)
chr2 (18-81)||(43331008-43331071)
chr2 (18-81)||(13354942-13355006)
chr2 (18-81)||(9723501-9723564)
chr2 (18-81)||(21393594-21393657)
chr2 (18-79)||(22591578-22591639)
chr2 (18-81)||(40262642-40262705)
[»] chr5 (18 HSPs)
chr5 (18-130)||(2477732-2477844)
chr5 (18-133)||(11360985-11361100)
chr5 (18-81)||(31640846-31640909)
chr5 (18-133)||(4892298-4892413)
chr5 (18-133)||(25398334-25398449)
chr5 (18-133)||(33584183-33584298)
chr5 (18-133)||(37321647-37321762)
chr5 (18-78)||(17545594-17545654)
chr5 (18-81)||(3362874-3362937)
chr5 (18-81)||(12850897-12850960)
chr5 (18-81)||(22912960-22913023)
chr5 (18-133)||(4433862-4433976)
chr5 (18-81)||(14138764-14138827)
chr5 (18-78)||(38899635-38899695)
chr5 (18-81)||(3521912-3521975)
chr5 (18-81)||(6043417-6043480)
chr5 (18-112)||(27481918-27482012)
chr5 (22-81)||(8145475-8145533)
[»] chr6 (18 HSPs)
chr6 (18-133)||(17175875-17175990)
chr6 (18-81)||(33695233-33695296)
chr6 (18-81)||(33696792-33696855)
chr6 (17-81)||(6127371-6127435)
chr6 (18-81)||(9752151-9752214)
chr6 (18-81)||(17705371-17705434)
chr6 (18-81)||(23290990-23291053)
chr6 (18-81)||(25987026-25987089)
chr6 (18-133)||(2309277-2309392)
chr6 (18-133)||(28675244-28675359)
chr6 (18-81)||(6031647-6031710)
chr6 (18-81)||(18365479-18365542)
chr6 (18-81)||(18370743-18370806)
chr6 (18-81)||(8515632-8515695)
chr6 (268-366)||(28049711-28049799)
chr6 (26-81)||(29693542-29693597)
chr6 (20-81)||(11548495-11548555)
chr6 (33-81)||(18889549-18889597)
[»] chr4 (26 HSPs)
chr4 (18-133)||(9088966-9089081)
chr4 (18-133)||(53123127-53123242)
chr4 (18-81)||(7745018-7745081)
chr4 (19-120)||(30563306-30563407)
chr4 (18-80)||(10442696-10442758)
chr4 (18-133)||(2624933-2625048)
chr4 (17-81)||(50156484-50156548)
chr4 (18-81)||(23964371-23964434)
chr4 (18-81)||(24392763-24392826)
chr4 (18-81)||(36073043-36073106)
chr4 (18-81)||(47290162-47290225)
chr4 (18-133)||(31078673-31078788)
chr4 (18-133)||(46441940-46442055)
chr4 (18-81)||(4751542-4751605)
chr4 (22-81)||(22199361-22199419)
chr4 (18-81)||(24128335-24128398)
chr4 (18-81)||(36073446-36073509)
chr4 (18-81)||(37219721-37219784)
chr4 (18-71)||(21802238-21802291)
chr4 (18-133)||(44893067-44893182)
chr4 (18-133)||(44893522-44893637)
chr4 (18-78)||(17655526-17655586)
chr4 (17-80)||(36073650-36073713)
chr4 (18-81)||(49387794-49387857)
chr4 (18-81)||(44744531-44744593)
chr4 (22-80)||(33530596-33530653)
[»] scaffold0096 (1 HSPs)
scaffold0096 (18-81)||(41107-41170)
[»] chr8 (27 HSPs)
chr8 (18-81)||(41819684-41819747)
chr8 (18-133)||(6108087-6108202)
chr8 (18-133)||(17841704-17841819)
chr8 (18-133)||(20091655-20091770)
chr8 (17-81)||(7017771-7017835)
chr8 (18-81)||(24211459-24211522)
chr8 (18-81)||(31347688-31347751)
chr8 (18-81)||(37985961-37986024)
chr8 (18-133)||(3596895-3597010)
chr8 (18-133)||(25581093-25581208)
chr8 (18-133)||(26041967-26042082)
chr8 (18-133)||(27835307-27835422)
chr8 (18-133)||(40779983-40780098)
chr8 (18-81)||(1645871-1645934)
chr8 (18-81)||(7022074-7022137)
chr8 (18-81)||(35353137-35353200)
chr8 (18-81)||(39772708-39772770)
chr8 (20-81)||(30055615-30055675)
chr8 (18-133)||(42754896-42755011)
chr8 (18-81)||(15187656-15187720)
chr8 (18-77)||(27782027-27782086)
chr8 (18-81)||(32064841-32064904)
chr8 (18-81)||(32393954-32394017)
chr8 (18-81)||(34665478-34665541)
chr8 (35-81)||(38017047-38017093)
chr8 (18-81)||(8453930-8453993)
chr8 (19-81)||(10044440-10044502)
[»] scaffold0228 (3 HSPs)
scaffold0228 (18-133)||(16080-16195)
scaffold0228 (18-133)||(26032-26147)
scaffold0228 (18-81)||(8498-8561)
[»] scaffold0085 (1 HSPs)
scaffold0085 (18-133)||(47946-48060)
[»] scaffold0204 (1 HSPs)
scaffold0204 (18-133)||(4492-4607)
[»] scaffold0471 (1 HSPs)
scaffold0471 (18-81)||(12938-13001)
[»] scaffold0178 (1 HSPs)
scaffold0178 (18-133)||(11717-11832)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 147 - 366
Target Start/End: Complemental strand, 41880834 - 41880615
Alignment:
Q  147 agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaattgaacaatataaagtt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||    
T  41880834 agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagttccgcttataattgaacaatataaagtt 41880735  T
Q  247 gcccgagttcttgtaactctagtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctc 346  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41880734 gcccgagttcttgtaactctggtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctc 41880635  T
Q  347 ataaattatcaatcaatacc 366  Q
    ||||||||||||||||||||    
T  41880634 ataaattatcaatcaatacc 41880615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 41883192 - 41883076
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta-nnnnnnnnnnataaaaggttaataaataagactga 116  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||           |||||||||| ||||||||||||||    
T  41883192 aaattaatgttagtcaataaaatctcagactggctagaaatcatggggtggtgggtgttatgtatttttttttttataaaaggttgataaataagactga 41883093  T
Q  117 aatccaaagatgattat 133  Q
    |||||||||||||||||    
T  41883092 aatccaaagatgattat 41883076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 3456161 - 3456274
Alignment:
Q  19 aattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaaa 118  Q
    |||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| |||||||||    
T  3456161 aattaatgttaaccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgtattttttttttatgaaagattaataaatgagactgaaa 3456260  T
Q  119 tccaaagatgatta 132  Q
    || |||||||||||    
T  3456261 tctaaagatgatta 3456274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 11347364 - 11347427
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||||  ||| |||||||||||||||||||||||||||||    
T  11347364 aaattaatgttagccaataaaatctcagagtggctagaaatcatggggtggtgggtgttatgta 11347427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 47738201 - 47738264
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | | |||||||||||||||||||||||||||||||    
T  47738201 aaattaatgttagccaataaaatctcagcctgaccagaaatcatggggtggtgggtgttatgta 47738264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 3574496 - 3574432
Alignment:
Q  17 aaaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||| ||||||||||||||   |||| ||||||||||||||||||||||||||||    
T  3574496 aaaattaatgttagccaataaaatctcagcttggccggaaatcatggggtggtgggtgttatgta 3574432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 22426313 - 22426250
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||||| |||| | |||| ||||||||||||||||||||||||||||    
T  22426313 aaattaatgttagccaataaaatttcagtctggccggaaatcatggggtggtgggtgttatgta 22426250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 30385107 - 30385170
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  30385107 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 30385170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 33113889 - 33113952
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||||| |||| | |||| ||||||||||||||||||||||||||||    
T  33113889 aaattaatgttagccaataaaatttcagtctggccggaaatcatggggtggtgggtgttatgta 33113952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 3137383 - 3137268
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| |||||||||||||| |||||||||||||          || |||| ||||||||| ||||||||    
T  3137383 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtgatgggtgttatgtatcttttttgtatgaaagattaataaatgagactgaa 3137284  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  3137283 atctaaaggtgattat 3137268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 8320553 - 8320489
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcat-ggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | ||||||||||||| ||||| ||||||||||||||    
T  8320553 aaattaatgttagccaataaaatctcagcctggccagaaatcatgggggtagtgggtgttatgta 8320489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 19650869 - 19650805
Alignment:
Q  17 aaaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||| | ||||||||||||   |||| ||||||||||||||||||||||||||||    
T  19650869 aaaattaatgttagccgataaaatctcagcttggccggaaatcatggggtggtgggtgttatgta 19650805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 3089513 - 3089576
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||||||||||   |||| ||||||||||||||||||||| ||||||    
T  3089513 aaattaatgttagccaataaaatctcagcttggccggaaatcatggggtggtgggtgctatgta 3089576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 8362014 - 8361951
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| | | |||| |||||||||||||||||||||| |||||    
T  8362014 aaattaatgttagccaataaaatctctgtcgggccggaaatcatggggtggtgggtgtcatgta 8361951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 40327921 - 40327984
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | |||| |||||||| |||||||||||||||||||    
T  40327921 aaattaatgttagccaataaaatctcaacctggccggaaatcatagggtggtgggtgttatgta 40327984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 42297450 - 42297513
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | | || |||||||||||||||||| |||||||||    
T  42297450 aaattaatgttagccaataaaatctcagcctgaccggaaatcatggggtggtggatgttatgta 42297513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 42297960 - 42298023
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||||||| | |||||||||    
T  42297960 aaattaatgttagccaataaaatctcagtctggccggaaatcatggggtggtagatgttatgta 42298023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 33145808 - 33145923
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| |||||||||||||| | | || ||||| ||| ||||||||||| ||||||          || |||||||||||||||||||||||    
T  33145808 aaattaatgttagccaataaaatctcagcctgaccggaaattatgaggtggtgggtggtatgtattttttttttatgaaaggttaataaataagactgaa 33145907  T
Q  118 atccaaagatgattat 133  Q
    ||| || | |||||||    
T  33145908 atctaagggtgattat 33145923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 37522149 - 37522264
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||  | |||| ||||| ||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  37522149 aaattaatgttaaccaataaaatctcaacctggccggaaattatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 37522248  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  37522249 atctaaaggtgattat 37522264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 6041980 - 6042040
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttat 78  Q
    ||||||||||||| |||||||||||||| | | || |||||||||||||||||| ||||||    
T  6041980 aaattaatgttagccaataaaatctcagcctgaccggaaatcatggggtggtggttgttat 6042040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 2754813 - 2754876
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | | || ||||||||||||| ||||||||||||||    
T  2754813 aaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtagtgggtgttatgta 2754876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 9796998 - 9796935
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| | | ||||  ||||||||||||||||||| |||||||    
T  9796998 aaattaatgttagccaataaaatctctgtcgggccgaaaatcatggggtggtgggtcttatgta 9796935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 33839627 - 33839690
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | ||||  ||||||||||||||| |||||||||||    
T  33839627 aaattaatgttagccaataaaatctcaatctggccgtaaatcatggggtggtaggtgttatgta 33839690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 73
Target Start/End: Complemental strand, 34482879 - 34482824
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggt 73  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||    
T  34482879 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggt 34482824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 44459367 - 44459402
Alignment:
Q  268 gtctaggagttcttgcaactctggtgtcatttctct 303  Q
    ||||||||||||||||||||||||||||||||||||    
T  44459367 gtctaggagttcttgcaactctggtgtcatttctct 44459402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 48161001 - 48161064
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||| |||| |||||||||||||| |  ||| |||| |||||||||||||||||||||||    
T  48161001 aaattaatattagccaataaaatctcagcctagccggaaaccatggggtggtgggtgttatgta 48161064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 24343643 - 24343706
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | | ||  ||||||| |||||||||||||||||||    
T  24343643 aaattaatgttagccaataaaatctcatcctgaccgaaaatcatcgggtggtgggtgttatgta 24343706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 41224329 - 41224392
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||  ||||||||||| |   || | ||||||||||||||||||||||||||||    
T  41224329 aaattaatgttagctaataaaatctctgttgggtcggaaatcatggggtggtgggtgttatgta 41224392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 36864996 - 36864937
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||| |||||||| ||||    |||||||||| ||||||||||||||||    
T  36864996 aaattaatgttagccaatagaatctcaggccgg----aaatcatgggatggtgggtgttatgta 36864937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 81
Target Start/End: Original strand, 30385528 - 30385560
Alignment:
Q  49 ggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||| ||||||||||||||||||||||||||||    
T  30385528 ggccggaaatcatggggtggtgggtgttatgta 30385560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 147 - 366
Target Start/End: Original strand, 50316199 - 50316418
Alignment:
Q  147 agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaattgaacaatataaagtt 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50316199 agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaactgaacaatataaagtt 50316298  T
Q  247 gcccgagttcttgtaactctagtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctc 346  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  50316299 gctcgagttcttgtaactctggtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccaatgtgagagcttcaagctc 50316398  T
Q  347 ataaattatcaatcaatacc 366  Q
    ||||||||||||||||||||    
T  50316399 ataaattatcaatcaatacc 50316418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 25463772 - 25463835
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  25463772 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 25463835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 40215084 - 40215147
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  40215084 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 40215147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 44094794 - 44094857
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  44094794 aaattaatgttagccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgta 44094857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 263 - 357
Target Start/End: Complemental strand, 32957213 - 32957119
Alignment:
Q  263 ctctagtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctcataaattatca 357  Q
    |||| |||||||||||||||||| ||||||||||||||||| ||||| ||| ||| ||||||||| |||  | |||| ||| |||||||||||||    
T  32957213 ctctggtctaggagttcttgcaattctggtgtcatttctctgttttctgttgccactttcttccattgttcgagcttaaagttcataaattatca 32957119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 19015500 - 19015615
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  19015500 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatcttttttgtatgaaagattaataaatgagactgaa 19015599  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  19015600 atctaaaggtgattat 19015615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 36966677 - 36966562
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  36966677 aaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 36966578  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  36966577 atctaaaggtgattat 36966562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 44691000 - 44690935
Alignment:
Q  16 caaaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||||| |||||||||||||| | |||| |||||||||||||| |||||||||||||    
T  44691000 caaaattaatgttagccaataaaatctcagtctggccggaaatcatggggtgttgggtgttatgta 44690935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 6883583 - 6883646
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  6883583 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 6883646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 40273798 - 40273861
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| | | |||| ||||||||||||||||||||||||||||    
T  40273798 aaattaatgttagccaataaaatctctgtcgggccggaaatcatggggtggtgggtgttatgta 40273861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 41876411 - 41876296
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | ||||  |||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  41876411 aaattaatgttaaccaataaaatctcagcctggccgaaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 41876312  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  41876311 atctaaaggtgattat 41876296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 3559713 - 3559772
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgtta 77  Q
    ||||||||||||| |||||||||||||| | || | ||||||||||||||||||||||||    
T  3559713 aaattaatgttagccaataaaatctcagcctgggcggaaatcatggggtggtgggtgtta 3559772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 27523224 - 27523161
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | |||| |||||||||||||| |||||||||||||    
T  27523224 aaattaatgttagccaataaaatctcatcctggccggaaatcatggggtgatgggtgttatgta 27523161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 51621026 - 51621085
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||||||||||||||||||| ||    |||||||||||||||||| |||||||||    
T  51621026 aaattaatgttagtcaataaaatctcagatcg----gaaatcatggggtggtggatgttatgta 51621085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 9910262 - 9910201
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatg 79  Q
    ||||||||||||  ||||||||||||||   |||| ||||||||||||||||||||||||||    
T  9910262 aaattaatgttaaccaataaaatctcagtatggccggaaatcatggggtggtgggtgttatg 9910201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 79
Target Start/End: Complemental strand, 33786604 - 33786543
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatg 79  Q
    ||||||||||||| |||||||||||| | | |||| |||||||||||||||||| |||||||    
T  33786604 aaattaatgttagccaataaaatctctgtcgggccggaaatcatggggtggtggatgttatg 33786543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 37821803 - 37821688
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | ||||  ||||||||||||| |||||||||||||          || |||| ||||||||| ||||||||    
T  37821803 aaattaatgttaaccaataaaatctcagcctggccgaaaatcatggggtgttgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 37821704  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  37821703 atctaaaggtgattat 37821688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 51737601 - 51737716
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | | ||  |||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  51737601 aaattaatgttaaccaataaaatctcagcctgaccgaaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 51737700  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  51737701 atctaaaggtgattat 51737716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 18404538 - 18404601
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||||||||||   || | |||||||| |||||||||||||||||||    
T  18404538 aaattaatgttagccaataaaatctcagtttggtcggaaatcatagggtggtgggtgttatgta 18404601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 20305100 - 20305037
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||||||||||   ||||  |||||||||| ||||||||||||||||    
T  20305100 aaattaatgttagccaataaaatctcagcttggccgaaaatcatgggatggtgggtgttatgta 20305037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 32000236 - 32000173
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||  | |  ||| ||||||||||||||||||||||||||||    
T  32000236 aaattaatgttagccaataaaatctatgtcgagccggaaatcatggggtggtgggtgttatgta 32000173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 52329365 - 52329427
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | ||||||||||||| ||||||| |||||||||||    
T  52329365 aaattaatgttaaccaataaaatctcagcctggccagaaatcat-gggtggtaggtgttatgta 52329427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 147 - 366
Target Start/End: Original strand, 11670437 - 11670656
Alignment:
Q  147 agtaaataattcaagacatccgcagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaattgaacaatataaagtt 246  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11670437 agtaaataattcaagacatccacagagagataagcatgaccagagaagtattgctcttaaatcagagagagtttcgcttctaactgaacaatataaagtt 11670536  T
Q  247 gcccgagttcttgtaactctagtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctc 346  Q
    ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||    
T  11670537 gcccgagttcttgcaactctggtctaggagttcttgcaactctggtgtcatttctctcttttcggtttcaattttcttccactgtgagagctttaagctc 11670636  T
Q  347 ataaattatcaatcaatacc 366  Q
    ||||||||||||||||||||    
T  11670637 ataaattatcaatcaatacc 11670656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 15329369 - 15329429
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttat 78  Q
    |||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  15329369 aaattaatgttagtcaataaaatctcagactggccggaaatcatggggtggtgagtgttat 15329429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 18037074 - 18037137
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||||||    
T  18037074 aaattaatgttagccaataaaatctctgtcgggccagaaatcatggggtggtgggtgttatgta 18037137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 42611907 - 42612022
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| ||||||||| |||| | | || ||||||||||||||||||||||||||||          || |||| ||||||||||||||||||    
T  42611907 aaattaatgttagccaataaaatttcagtctgaccggaaatcatggggtggtgggtgttatgtattttttttttatgaaagattaataaataagactgaa 42612006  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  42612007 atctaaaggtgattat 42612022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 15238478 - 15238538
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttat 78  Q
    |||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||||    
T  15238478 aaattaatgttagtcaataaaatctctgtcgggccggaaatcatggggtggtgggtgttat 15238538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 3962075 - 3962138
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||||||||||   |||| ||||||||||||||||||||||||||||    
T  3962075 aaattaatgttagccaataaaatctcagcttggccggaaatcatggggtggtgggtgttatgta 3962138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 24395068 - 24395131
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | |||| ||||||||||||||||||||||||||||    
T  24395068 aaattaatgttagccaataaaatctcaacctggccggaaatcatggggtggtgggtgttatgta 24395131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 37477049 - 37476986
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| | | |||| ||||||||||||||||||||||||||||    
T  37477049 aaattaatgttagccaataaaatctctgtcgggccggaaatcatggggtggtgggtgttatgta 37476986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 48880896 - 48880833
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  48880896 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 48880833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 4974704 - 4974589
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| ||||||||||||||   |||| ||||||||| ||||||||||||||||||          || |||||||||||||| ||||||||    
T  4974704 aaattaatgttagccaataaaatctcagtttggccggaaatcatgaggtggtgggtgttatgtattttttttttatgaaaggttaataaatgagactgaa 4974605  T
Q  118 atccaaagatgattat 133  Q
    ||| || | |||||||    
T  4974604 atctaagggtgattat 4974589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 15577819 - 15577756
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||| |||||||| | |||| ||||||||||| ||||||||||||||||    
T  15577819 aaattaatgttagccaatataatctcagtctggccggaaatcatgggttggtgggtgttatgta 15577756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 25167819 - 25167756
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| |||||||||||||| |||||||||||||    
T  25167819 aaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtgatgggtgttatgta 25167756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 34482931 - 34482993
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| |||||||| |||||||||||||||||||    
T  34482931 aaattaatgttagccaataaaatctcagtctggccggaaatcat-gggtggtgggtgttatgta 34482993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 42696179 - 42696242
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||||||||||||||||  | |||| ||||||| |||||||||| |||||||||    
T  42696179 aaattaatgttagtcaataaaatctcaacctggccggaaatcaaggggtggtggatgttatgta 42696242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 45637808 - 45637871
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||| ||| |||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  45637808 aaattaatgctagccaataaaatctcagtctggccggaaatcatggggtggtggatgttatgta 45637871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 30848665 - 30848728
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||| | ||||||||||||||    
T  30848665 aaattaatgttaaccaataaaatctcagtctggccggaaatcatgggatagtgggtgttatgta 30848728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 35444654 - 35444714
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttat 78  Q
    ||||||||||||  |||||||||||||| | ||||  |||||||||| |||||||||||||    
T  35444654 aaattaatgttaaccaataaaatctcagcctggccgaaaatcatgggatggtgggtgttat 35444714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 20010067 - 20010004
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | |||| ||||| |||||||  |||||||||||||    
T  20010067 aaattaatgttagccaataaaatctcaacctggccggaaattatggggttatgggtgttatgta 20010004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 29737235 - 29737298
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | | || ||||||||||||| ||||| ||||||||    
T  29737235 aaattaatgttagccaataaaatctcaacctgaccggaaatcatggggtagtgggagttatgta 29737298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 27847728 - 27847791
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||    
T  27847728 aaattaatgttagtcaataaaatctcagcctgaccagaaatcatggggtggtgggtgttatgta 27847791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 3989172 - 3989235
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  3989172 aaattaatgttagccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgta 3989235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 9293545 - 9293482
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  9293545 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 9293482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 7475477 - 7475362
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  7475477 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 7475378  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  7475377 atctaaaggtgattat 7475362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 23268031 - 23267916
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  23268031 aaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 23267932  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  23267931 atctaaaggtgattat 23267916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 33380303 - 33380418
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  33380303 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatctttttttaatgaaagattaataaatgagactgaa 33380402  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  33380403 atctaaaggtgattat 33380418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 16767441 - 16767378
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| |||||||| |||||||||||||||||||    
T  16767441 aaattaatgttagccaataaaatctcagtctggccggaaatcatagggtggtgggtgttatgta 16767378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 31174803 - 31174740
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | | || ||||||||||||||||||||||||||||    
T  31174803 aaattaatgttagccaataaaatctcagtctgaccggaaatcatggggtggtgggtgttatgta 31174740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 35160853 - 35160916
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  35160853 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 35160916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 21936177 - 21936241
Alignment:
Q  18 aaattaatgttagtcaataaaatctc-agaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| || | |||| ||||||||||||||||||||||||||||    
T  21936177 aaattaatgttagccaataaaatctctagcctggccggaaatcatggggtggtgggtgttatgta 21936241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 10661983 - 10662046
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| |||||||| |||||||||||||||||||    
T  10661983 aaattaatgttaaccaataaaatctcagcctggccggaaatcatagggtggtgggtgttatgta 10662046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 14941335 - 14941273
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||| |||||| | |||||||||||||| ||||||||||||||||||    
T  14941335 aaattaatgttagccaataaa-tctcagcctggccagaaatcatgaggtggtgggtgttatgta 14941273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 43331008 - 43331071
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||||| || | | |||| ||||||||||||||||||||||||||||    
T  43331008 aaattaatgttagccaataaaatttctgtcgggccggaaatcatggggtggtgggtgttatgta 43331071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 13354942 - 13355006
Alignment:
Q  18 aaattaatgttagtcaataaaatctc-agaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| || | |||| |||||||||| |||||||||||||||||    
T  13354942 aaattaatgttagccaataaaatctctagcctggccggaaatcatggagtggtgggtgttatgta 13355006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 9723501 - 9723564
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||  ||||||||||||| |   || ||||||||||||||||||||||||||||    
T  9723501 aaattaatgttagctaataaaatctcagcctcaccggaaatcatggggtggtgggtgttatgta 9723564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 21393657 - 21393594
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||  | | |||| ||||||||||||||||||||||||||||    
T  21393657 aaattaatgttaaccaataaaatctatgtcgggccggaaatcatggggtggtgggtgttatgta 21393594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 79
Target Start/End: Original strand, 22591578 - 22591639
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatg 79  Q
    ||||||||||||| |||||||||||||| |  ||  |||||||||||||||||||| |||||    
T  22591578 aaattaatgttagccaataaaatctcagcctagcaggaaatcatggggtggtgggtattatg 22591639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 40262705 - 40262642
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||| |||| |||||||||||||  | | || ||||| ||||||||||||||||||||||    
T  40262705 aaattaatattagccaataaaatctcaccctgaccggaaattatggggtggtgggtgttatgta 40262642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 130
Target Start/End: Original strand, 2477732 - 2477844
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||||||||||||    
T  2477732 aaattaatgttagtcaataaaatttcagcctggccggaaatcatggggtggtgggtgttatgtattttttttttatgaaagattaataaataagactgaa 2477831  T
Q  118 atccaaagatgat 130  Q
    ||| |||| ||||    
T  2477832 atctaaaggtgat 2477844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 11361100 - 11360985
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||| ||||    
T  11361100 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtattttttttgtatgaaagattaataaattagattgaa 11361001  T
Q  118 atccaaagatgattat 133  Q
    ||| ||||||||||||    
T  11361000 atctaaagatgattat 11360985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 31640909 - 31640846
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  31640909 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 31640846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 4892298 - 4892413
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  4892298 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatcttcttttaatgaaagattaataaatgagactgaa 4892397  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  4892398 atctaaaggtgattat 4892413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 25398334 - 25398449
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  25398334 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 25398433  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  25398434 atctaaaggtgattat 25398449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 33584298 - 33584183
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  33584298 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 33584199  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  33584198 atctaaaggtgattat 33584183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 37321762 - 37321647
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| |||||||||||||| |  ||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  37321762 aaattaatgttagccaataaaatctcagtctagccggaaatcatggggtggtgggtgttatgtattttttatttatgaaagattaataaatgagactgaa 37321663  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  37321662 atctaaaggtgattat 37321647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 17545654 - 17545594
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttat 78  Q
    |||||||||||||||||||||||||| | | |||| |||||||||||||||||||||||||    
T  17545654 aaattaatgttagtcaataaaatctctgtcgggccggaaatcatggggtggtgggtgttat 17545594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 3362874 - 3362937
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  3362874 aaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgta 3362937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12850897 - 12850960
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  12850897 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 12850960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 22913023 - 22912960
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| | | ||||||||||||||||||||||| |||||||||    
T  22913023 aaattaatgttagccaataaaatctctgtcgggccagaaatcatggggtggtggatgttatgta 22912960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 4433976 - 4433862
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||| ||||||||||||||||          || |||| ||||||||||||||||||    
T  4433976 aaattaatgttaaccaataaaatctcagtctggccggaaatcatgggatggtgggtgttatgta-tttttttttatgaaagattaataaataagactgaa 4433878  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  4433877 atctaaaggtgattat 4433862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 14138764 - 14138827
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |  | ||||||||||||||||||||||||||||    
T  14138764 aaattaatgttagccaataaaatctcagcctgatcggaaatcatggggtggtgggtgttatgta 14138827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 78
Target Start/End: Complemental strand, 38899695 - 38899635
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttat 78  Q
    ||||||||||||  |||||||||||||| | ||||  ||||||||||||||||||||||||    
T  38899695 aaattaatgttaaccaataaaatctcagtctggccgaaaatcatggggtggtgggtgttat 38899635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 3521975 - 3521912
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  ||||||||||| ||   |||| ||||||||||||||||||||||||||||    
T  3521975 aaattaatgttaaccaataaaatcttagtttggccggaaatcatggggtggtgggtgttatgta 3521912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 6043480 - 6043417
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||| |||  |||||||||||||| | |||| |||||||||||||| |||||||||||||    
T  6043480 aaattaatattaaccaataaaatctcagcctggccggaaatcatggggtgttgggtgttatgta 6043417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 112
Target Start/End: Original strand, 27481918 - 27482012
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataaga 112  Q
    ||||||||||||| ||||||||| |||  |  | | ||||||||||||||||||||||||||||          |||||||||||||||||||||    
T  27481918 aaattaatgttagccaataaaatttcatcctagtcggaaatcatggggtggtgggtgttatgtattttttttttataaaaggttaataaataaga 27482012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 8145475 - 8145533
Alignment:
Q  22 taatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||| |||||||||||||| | || | |||||||| |||||||||||||||||||    
T  8145475 taatgttagccaataaaatctcagcctggtcggaaatcat-gggtggtgggtgttatgta 8145533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 17175990 - 17175875
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  17175990 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtattttttttttatgaaagattaataaatgagactgaa 17175891  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  17175890 atctaaaggtgattat 17175875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 33695296 - 33695233
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  33695296 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 33695233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 33696792 - 33696855
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  33696792 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 33696855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Original strand, 6127371 - 6127435
Alignment:
Q  17 aaaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||| ||||||||| ||||   |||||||||||||||||||||||||||||||||    
T  6127371 aaaattaatgttagccaataaaatatcagtttggccagaaatcatggggtggtgggtgttatgta 6127435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 9752214 - 9752151
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||||| |||||||||||||    
T  9752214 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtgatgggtgttatgta 9752151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 17705434 - 17705371
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||| ||||||||||||||||    
T  17705434 aaattaatgttagccaataaaatctcagtctggccggaaatcatgggatggtgggtgttatgta 17705371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 23291053 - 23290990
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | ||||||||||||||||||| |||||||||||||    
T  23291053 aaattaatgttaaccaataaaatctcagcctggccagaaatcatggggtgatgggtgttatgta 23290990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 25987026 - 25987089
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  25987026 aaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgta 25987089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 2309392 - 2309277
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| ||||||||||||||   |||| ||||||||||||| ||||||||||||||          || |||||||||||||| ||||||||    
T  2309392 aaattaatgttagccaataaaatctcagcttggccggaaatcatggggttgtgggtgttatgtattttttttttatgaaaggttaataaatgagactgaa 2309293  T
Q  118 atccaaagatgattat 133  Q
    ||| || | |||||||    
T  2309292 atctaagggtgattat 2309277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 28675244 - 28675359
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    |||||||||||||  ||||||||||||| | |||| ||||||||||||||||||| ||||||||          || |||||||||||||| ||||||||    
T  28675244 aaattaatgttagctaataaaatctcagcctggccggaaatcatggggtggtgggggttatgtattttttatttatgaaaggttaataaatgagactgaa 28675343  T
Q  118 atccaaagatgattat 133  Q
    ||| || | |||||||    
T  28675344 atctaagggtgattat 28675359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 6031710 - 6031647
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||| ||| | |||| ||||||||||||||||||||||||||||    
T  6031710 aaattaatgttaaccaataaaatcccagcctggccggaaatcatggggtggtgggtgttatgta 6031647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 18365542 - 18365479
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | |||| ||||||||||||| ||||||||||||||    
T  18365542 aaattaatgttagccaataaaatctcatcctggccggaaatcatggggtagtgggtgttatgta 18365479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 18370806 - 18370743
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||  | |||| ||||||||||||| ||||||||||||||    
T  18370806 aaattaatgttagccaataaaatctcatcctggccggaaatcatggggtagtgggtgttatgta 18370743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 8515695 - 8515632
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |  | |||||||||||||||||| |||||||||    
T  8515695 aaattaatgttagccaataaaatctcagcctgatcggaaatcatggggtggtggatgttatgta 8515632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 268 - 366
Target Start/End: Original strand, 28049711 - 28049799
Alignment:
Q  268 gtctaggagttcttgcaactctggtgtcatttctctcttttcggtttccattttcttccactgtgagtgcttcaagctcataaattatcaatcaatacc 366  Q
    |||||||||||||||||||||||||||||||||| | ||||| | |||||||          || || |||||||||||||||||||||| ||||||||    
T  28049711 gtctaggagttcttgcaactctggtgtcatttctttattttctgcttccatt----------gttagagcttcaagctcataaattatcagtcaatacc 28049799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Original strand, 29693542 - 29693597
Alignment:
Q  26 gttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||| |||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  29693542 gttagccaataaaatctcagcctggccggaaatcatggggtggtggatgttatgta 29693597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 81
Target Start/End: Complemental strand, 11548555 - 11548495
Alignment:
Q  20 attaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||| |||||||||||| | | |||| ||||||||||||| ||||||||||||||    
T  11548555 attaatgttagccaataaaatctctgtcgggccggaaatcatggggt-gtgggtgttatgta 11548495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 18889597 - 18889549
Alignment:
Q  33 aataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |  ||| |||||||||||||||||||| |||||||    
T  18889597 aataaaatctcagccttgccggaaatcatggggtggtgggttttatgta 18889549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 9088966 - 9089081
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  9088966 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatcttttttgtatgaaagattaataaatgagactgaa 9089065  T
Q  118 atccaaagatgattat 133  Q
    ||| ||||||||||||    
T  9089066 atctaaagatgattat 9089081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 53123127 - 53123242
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  53123127 aaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgtatcttttttgtatgaaagattaataaatgagactgaa 53123226  T
Q  118 atccaaagatgattat 133  Q
    ||| ||||||||||||    
T  53123227 atctaaagatgattat 53123242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 7745081 - 7745018
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  7745081 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 7745018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 19 - 120
Target Start/End: Original strand, 30563306 - 30563407
Alignment:
Q  19 aattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaaa 118  Q
    |||||||||| | |||||||||||||| | |||| ||||||||||||||||||||||||||||          || ||||||||||||||||||||||||    
T  30563306 aattaatgttggccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtattttttttttatgaaaggttaataaataagactgaaa 30563405  T
Q  119 tc 120  Q
    ||    
T  30563406 tc 30563407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 18 - 80
Target Start/End: Complemental strand, 10442758 - 10442696
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgt 80  Q
    ||||||||||||| |||||||||||||| | |||| |||||||||||||||||||||||||||    
T  10442758 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgt 10442696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 2624933 - 2625048
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    |||||||||||| ||||||||||||||| | |||| |||||||||| |||||||||||||||||          || |||| ||||||||| ||||||||    
T  2624933 aaattaatgttaatcaataaaatctcagtctggccggaaatcatggagtggtgggtgttatgtattttttttttatgaaagattaataaatgagactgaa 2625032  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  2625033 atctaaaggtgattat 2625048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 50156548 - 50156484
Alignment:
Q  17 aaaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  50156548 aaaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 50156484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 23964434 - 23964371
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||||||||||||||||| | | || ||||||||| ||||||||||||||||||    
T  23964434 aaattaatgttagtcaataaaatctcagcctgaccggaaatcatgcggtggtgggtgttatgta 23964371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 24392763 - 24392826
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||||||||||||||| | | |||| |||||||||||||| |||||||||||||    
T  24392763 aaattaatgttagtcaataaaatctctgtcgggccggaaatcatggggtgatgggtgttatgta 24392826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 36073043 - 36073106
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  36073043 aaattaatgttaaccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgta 36073106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 47290162 - 47290225
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  47290162 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 47290225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 31078788 - 31078673
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| |||||||||||||| |||||||||||||          || |||| ||||||||| ||| ||||    
T  31078788 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtgatgggtgttatgtatcttttttttatgaaagattaataaatgagattgaa 31078689  T
Q  118 atccaaagatgattat 133  Q
    ||| ||||||||||||    
T  31078688 atctaaagatgattat 31078673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 46441940 - 46442055
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||  | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  46441940 aaattaatgttaaccaataaaatctcaacctggccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 46442039  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  46442040 atctaaaggtgattat 46442055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 4751542 - 4751605
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | || | ||||||||||||||||||||||||||||    
T  4751542 aaattaatgttaaccaataaaatctcagtctggtcggaaatcatggggtggtgggtgttatgta 4751605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 81
Target Start/End: Original strand, 22199361 - 22199419
Alignment:
Q  22 taatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||| |||||||||||||| | ||||||||||||| |||||||||||||||||||    
T  22199361 taatgttagccaataaaatctcagcctggccagaaatcat-gggtggtgggtgttatgta 22199419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 24128335 - 24128398
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  24128335 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtggatgttatgta 24128398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 36073446 - 36073509
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | | || ||||||||||||||||||||||||||||    
T  36073446 aaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtgttatgta 36073509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 37219721 - 37219784
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||||||||||||||||| | |||| |||||||| ||||| ||| |||||||||    
T  37219721 aaattaatgttagtcaataaaatctcagtctggccggaaatcattgggtgatggatgttatgta 37219784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 21802291 - 21802238
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgg 71  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||    
T  21802291 aaattaatgttagccaataaaatctcagtctggccggaaatcatggggtggtgg 21802238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 44893182 - 44893067
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | ||||  |||||||||| ||||||||||||||||          || |||| ||||||||| ||||||||    
T  44893182 aaattaatgttaaccaataaaatctcagcctggccgaaaatcatgggatggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 44893083  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  44893082 atctaaaggtgattat 44893067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 44893522 - 44893637
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | ||||  |||||||||| ||||||||||||||||          || |||| ||||||||| ||||||||    
T  44893522 aaattaatgttaaccaataaaatctcagcctggccgaaaatcatgggatggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 44893621  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  44893622 atctaaaggtgattat 44893637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 17655526 - 17655586
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttat 78  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||| || ||||||||||    
T  17655526 aaattaatgttagccaataaaatctcagcctggccggaaatcatgggatgatgggtgttat 17655586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 17 - 80
Target Start/End: Complemental strand, 36073713 - 36073650
Alignment:
Q  17 aaaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgt 80  Q
    ||||||||| |||| ||||||||||||||   |||| ||||||||||||||||| |||||||||    
T  36073713 aaaattaatattagccaataaaatctcagtttggccggaaatcatggggtggtgcgtgttatgt 36073650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 49387857 - 49387794
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| |  ||| |||||||||||||||||| |||||||||    
T  49387857 aaattaatgttaaccaataaaatctcagcctagccggaaatcatggggtggtggatgttatgta 49387794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 44744531 - 44744593
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||| ||||||||| ||||||| |||| | |||| |||||||| |||||||||||||||||||    
T  44744531 aaattgatgttagtcgataaaat-tcagtctggccggaaatcatagggtggtgggtgttatgta 44744593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 80
Target Start/End: Complemental strand, 33530653 - 33530596
Alignment:
Q  22 taatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgt 80  Q
    ||||||||| ||||||||| |||| | |||| |||||||| ||||||||||||||||||    
T  33530653 taatgttagccaataaaatttcagcctggccggaaatcat-gggtggtgggtgttatgt 33530596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 41107 - 41170
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  41107 aaattaatgttagccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 41170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 41819747 - 41819684
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||||||||||    
T  41819747 aaattaatgttagccaataaaatctcagcccggccggaaatcatggggtggtgtgtgttatgta 41819684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 6108202 - 6108087
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  6108202 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatcttctttttatgaaagattaataaatgagactgaa 6108103  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  6108102 atctaaaggtgattat 6108087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 17841819 - 17841704
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  17841819 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 17841720  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  17841719 atctaaaggtgattat 17841704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 20091770 - 20091655
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| |||||||||||||| |  ||| ||||||||||||||||||||||||||||          || |||||||||||||| ||||||||    
T  20091770 aaattaatgttagccaataaaatctcagcctagccggaaatcatggggtggtgggtgttatgtattttttttttatgaaaggttaataaatgagactgaa 20091671  T
Q  118 atccaaagatgattat 133  Q
    ||| || | |||||||    
T  20091670 atctaagggtgattat 20091655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 7017835 - 7017771
Alignment:
Q  17 aaaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||| |||||||||||| | | |||| ||||||||||||||||||||||||||||    
T  7017835 aaaattaatgttagccaataaaatctctgtcgggccggaaatcatggggtggtgggtgttatgta 7017771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 24211522 - 24211459
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  24211522 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 24211459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 31347751 - 31347688
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| | | |||||||||||||||||| ||||||||||||||    
T  31347751 aaattaatgttagccaataaaatctctgtcgggccagaaatcatggggtagtgggtgttatgta 31347688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 37986024 - 37985961
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||| ||| |||||||||||||| | |||| ||||||||||||||||||||||||||||    
T  37986024 aaattaatgctagccaataaaatctcagtctggccggaaatcatggggtggtgggtgttatgta 37985961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 3597010 - 3596895
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | | || ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  3597010 aaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 3596911  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  3596910 atctaaaggtgattat 3596895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 25581208 - 25581093
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | | || ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  25581208 aaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 25581109  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  25581108 atctaaaggtgattat 25581093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 26042082 - 26041967
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | | || ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  26042082 aaattaatgttaaccaataaaatctcagcctgaccggaaatcatggggtggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 26041983  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  26041982 atctaaaggtgattat 26041967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 27835422 - 27835307
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||| |||||||||||||| |  | | ||||||||||| ||||||||||||||||          ||||||||||||||||| ||| ||||    
T  27835422 aaattaatgttagccaataaaatctcagcctagacggaaatcatgggatggtgggtgttatgtatttttgttttataaaaggttaataaatgagattgaa 27835323  T
Q  118 atccaaagatgattat 133  Q
    ||| || |||||||||    
T  27835322 atctaaggatgattat 27835307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 40780098 - 40779983
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| |||||||||||||||||| |||||||||          || |||| ||||||||| ||||||||    
T  40780098 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtggatgttatgtatcttttttttatgaaagattaataaatgagactgaa 40779999  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  40779998 atctaaaggtgattat 40779983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 1645934 - 1645871
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||||  ||||||||||||| | || | ||||||||||||||||||||||||||||    
T  1645934 aaattaatgttagctaataaaatctcagcctggtcggaaatcatggggtggtgggtgttatgta 1645871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 7022074 - 7022137
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||  | | |||| ||||||||||||||||||||||||||||    
T  7022074 aaattaatgttagccaataaaatctatgtcgggccggaaatcatggggtggtgggtgttatgta 7022137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 35353137 - 35353200
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||| ||||||||||||||||||    
T  35353137 aaattaatgttaaccaataaaatctcagcctggccggaaatcatgaggtggtgggtgttatgta 35353200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Complemental strand, 39772770 - 39772708
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| || ||| ||||||||||| ||||||||||||||||    
T  39772770 aaattaatgttagccaataaaatctcag-ccagccggaaatcatgggatggtgggtgttatgta 39772708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 30055615 - 30055675
Alignment:
Q  20 attaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||| |||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  30055615 attaatgttagccaataaaatctcag-ctggccggaaatcatggggtggtggatgttatgta 30055675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Complemental strand, 42755011 - 42754896
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | ||||  |||||||||| ||||||||||||||||          || |||| ||||||||| ||||||||    
T  42755011 aaattaatgttaaccaataaaatctcagcctggccgaaaatcatgggatggtgggtgttatgtattttttttttatgaaagattaataaatgagactgaa 42754912  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  42754911 atctaaaggtgattat 42754896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 15187656 - 15187720
Alignment:
Q  18 aaattaatgttagtcaataaaatctc-agaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||| || | |||| |||||||||| |||||||||||||||||    
T  15187656 aaattaatgttagccaataaaatctctagcctggccggaaatcatggagtggtgggtgttatgta 15187720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 77
Target Start/End: Complemental strand, 27782086 - 27782027
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgtta 77  Q
    ||||||||||||| ||||||||||| || | |||| |||||||| |||||||||||||||    
T  27782086 aaattaatgttagccaataaaatcttagtctggccggaaatcattgggtggtgggtgtta 27782027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 32064841 - 32064904
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||| || |||||||||||||    
T  32064841 aaattaatgttaaccaataaaatctcagcctggccggaaatcatgggctgatgggtgttatgta 32064904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 32393954 - 32394017
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| |||||||||||||| |  |||  ||||||||||||||| |||||||||||    
T  32393954 aaattaatgttagccaataaaatctcagtctagccgaaaatcatggggtggtaggtgttatgta 32394017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 34665478 - 34665541
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||| ||||||||||||||   ||||  ||||||||| |||||||||||||||||    
T  34665478 aaattaatgttagccaataaaatctcagcttggccgaaaatcatggagtggtgggtgttatgta 34665541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 35 - 81
Target Start/End: Original strand, 38017047 - 38017093
Alignment:
Q  35 taaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||| | |||| ||||||||||||||||||||||||||||    
T  38017047 taaaatctcagcctggccggaaatcatggggtggtgggtgttatgta 38017093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 8453930 - 8453993
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||| |  |||||||||||||| | |||| ||||| |||| |||||||||||||||||    
T  8453930 aaattaatgtaacacaataaaatctcagcctggccggaaattatggtgtggtgggtgttatgta 8453993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 81
Target Start/End: Original strand, 10044440 - 10044502
Alignment:
Q  19 aattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    |||||||||||| |||||||||||||  | || | |||||||||| ||||||| |||||||||    
T  10044440 aattaatgttagccaataaaatctcaatctggtcggaaatcatggagtggtggttgttatgta 10044502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228 (Bit Score: 46; Significance: 4e-17; HSPs: 3)
Name: scaffold0228
Description:

Target: scaffold0228; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 16080 - 16195
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||| ||||||||||||||||          || |||| ||||||||| ||||||||    
T  16080 aaattaatgttaaccaataaaatctcaggctggccggaaatcatgggatggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 16179  T
Q  118 atccaaagatgattat 133  Q
    ||| ||||||||||||    
T  16180 atctaaagatgattat 16195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 26032 - 26147
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||| ||||||||||||||||          || |||| ||||||||| ||||||||    
T  26032 aaattaatgttaaccaataaaatctcaggctggccggaaatcatgggatggtgggtgttatgtatcttttttttatgaaagattaataaatgagactgaa 26131  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  26132 atctaaaggtgattat 26147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0228; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 8498 - 8561
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||| ||||||||||||||||    
T  8498 aaattaatgttaaccaataaaatctcaggctggccggaaatcatgggatggtgggtgttatgta 8561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 47946 - 48060
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | |||| ||||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  47946 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtgggtgttatgta-tttatttttatgaaagattaataaatgagactgaa 48044  T
Q  118 atccaaagatgattat 133  Q
    ||| ||||||||||||    
T  48045 atctaaagatgattat 48060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 4492 - 4607
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | ||||  |||||||||||||||||||||||||||          || |||| ||||||||| ||||||||    
T  4492 aaattaatgttaaccaataaaatctcagcctggccgaaaatcatggggtggtgggtgttatgtatctgttttttatgaaagattaataaatgagactgaa 4591  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  4592 atctaaaggtgattat 4607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0471 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0471
Description:

Target: scaffold0471; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 81
Target Start/End: Original strand, 12938 - 13001
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgta 81  Q
    ||||||||||||  |||||||||||||| | |||| |||||||||||||||||| |||||||||    
T  12938 aaattaatgttaaccaataaaatctcagcctggccggaaatcatggggtggtggatgttatgta 13001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 133
Target Start/End: Original strand, 11717 - 11832
Alignment:
Q  18 aaattaatgttagtcaataaaatctcagaccggccagaaatcatggggtggtgggtgttatgtannnnnnnnnnataaaaggttaataaataagactgaa 117  Q
    ||||||||||||  |||||||||||||| | ||||  |||||||||||||||| ||||||||||          || |||| ||||||||| ||||||||    
T  11717 aaattaatgttaaccaataaaatctcagcctggccgaaaatcatggggtggtgagtgttatgtattttttttttatgaaagattaataaatgagactgaa 11816  T
Q  118 atccaaagatgattat 133  Q
    ||| |||| |||||||    
T  11817 atctaaaggtgattat 11832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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