View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3161_low_8 (Length: 260)
Name: NF3161_low_8
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_low_8 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 260
Target Start/End: Complemental strand, 3686221 - 3685977
Alignment:
| Q |
16 |
cacaaaaccactcagcaactagcaagtaaccactttcttttttcttttctccctaacataactgtcatattttatttctagtactgctatttatcaagaa |
115 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3686221 |
cacaaaaccactcggcaactagcaagtaaccactttcttttttcttttctccctaacataactgtcatattttttttctagtactgctatttatcaagaa |
3686122 |
T |
|
| Q |
116 |
cacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686121 |
cacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtg |
3686022 |
T |
|
| Q |
216 |
ttataagaaccaatcacttactgccacatcagttcgcgatgcgtt |
260 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3686021 |
ttaaaagaaccaatcacttactgccacatcagttcgcgatgcgtt |
3685977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 79 - 260
Target Start/End: Complemental strand, 3693925 - 3693743
Alignment:
| Q |
79 |
gtcatattttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgta |
178 |
Q |
| |
|
||||||||||||||||||||||| | |||||||| |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
3693925 |
gtcatattttatttctagtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatacgtgttgtaattataaaggaagaagcagtgta |
3693826 |
T |
|
| Q |
179 |
tagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
260 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
3693825 |
tggttcaggaatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgtt |
3693743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 72 - 260
Target Start/End: Complemental strand, 3679409 - 3679213
Alignment:
| Q |
72 |
cataactgtcatatttt-atttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaa |
163 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| || || |||||||| || |
|
|
| T |
3679409 |
cataactgtcatattttcatttctagtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaa |
3679310 |
T |
|
| Q |
164 |
ggaagaagttgtgtatagttcatgaatgagcggaaatcacagtgtgtatgtgttataag-aaccaatcacttactgccacatcagttcgcgatgcgtt |
260 |
Q |
| |
|
| ||||||| |||||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||||| |||||| |||| |||| |||||||| |
|
|
| T |
3679309 |
g-aagaagtagtgtatagttcaggaatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtt |
3679213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 84 - 205
Target Start/End: Complemental strand, 3675716 - 3675595
Alignment:
| Q |
84 |
attttatttctagtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatacgtgtggtaattataaaggaagaagttgtgtatagtt |
183 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |||| | ||||||||||||||||| ||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3675716 |
attttatttctagtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattcgtgttgtaattataaaggaagaagcagtgtatagtt |
3675617 |
T |
|
| Q |
184 |
catgaatgagcggaaatcacag |
205 |
Q |
| |
|
| |||||||||||||| |||| |
|
|
| T |
3675616 |
ctggaatgagcggaaatgacag |
3675595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University