View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3161_low_9 (Length: 250)
Name: NF3161_low_9
Description: NF3161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3161_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 10006530 - 10006305
Alignment:
| Q |
18 |
ggattcaaggtagctttcttcccatactcttttttgctcgcccatgtgnnnnnnnaacttaattttggccttttggcgcacatgattttcataaatgtct |
117 |
Q |
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| T |
10006530 |
ggattcaaggtagctttcttcccatactcttttttgcttgcccatgtgtttttttaacttaattttggccttttggcgcacatgattttcataaatgtct |
10006431 |
T |
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| Q |
118 |
ttatcttatatgtcgtgtttagttaatgtaatttttgtgggctaccagcctaccactgatgtatattcaaatagttggagggtgttgtttgcttttgcat |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10006430 |
ttatcttatatgtcgtgtttagtcaatgtaatttttgtgggctaccagcctaccactgatgtatattcaaatagttggagggtgttgtttgcttttgcat |
10006331 |
T |
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| Q |
218 |
tttattcatgttttttgcctttgctt |
243 |
Q |
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|||||||||||||||||| ||||||| |
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| T |
10006330 |
tttattcatgttttttgcttttgctt |
10006305 |
T |
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