View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_1 (Length: 825)
Name: NF3162_high_1
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 54 - 656
Target Start/End: Complemental strand, 47037627 - 47037019
Alignment:
| Q |
54 |
aacactactcttagaaccaaacactaggtccaactcaatagaccatcaacgcctataaaaaggcactgttagccatcaaaaggtactaacaatataaagt |
153 |
Q |
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| T |
47037627 |
aacactactcttagacccaaacactaggtccaagtcaatagaccatcaacacctataaaaaggcactgttagccatcaaaaggtaattacaatataaagt |
47037528 |
T |
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| Q |
154 |
ttaacctctcactct-----cttttattagcttgagcgtaaaagtgtgtgcaaatactcacaactcgcatattgacggtcattgctccaattcgcgttga |
248 |
Q |
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||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||| |||| |
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| T |
47037527 |
ttaacctctcactctttgctcttttactagcttgagcgtaaaagtgtctgcaaatactcacaactcgcatattgacggttattgctccaattcgcattga |
47037428 |
T |
|
| Q |
249 |
ggtagttgttgcttgacaaacaaaatcattctaatcactctatagcaatatgnnnnnnngaagacacttgcgttttttgtgaactatgttatcttgatga |
348 |
Q |
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| T |
47037427 |
ggcggttgttgcttgacaaacaaaatcattctaatcactctatatcaatatgttttttttaagacacttgcgttttttgtgaactatattatcttgatga |
47037328 |
T |
|
| Q |
349 |
tgattgatcaaaatatgtgcaaatgcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagataggattcataggaacggcagtggccc |
448 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47037327 |
tgatagatcaaaatatgtgcaaatgcaattaaccaatgtgaaaagaggccaacgaatgacgaagagataaagataggattcataggaacggcagtggccc |
47037228 |
T |
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| Q |
449 |
aacaaagcggcattagtttgaaacgtac-nnnnnnnnttaacattgattcggttgctaaaaacaagtggatattgagataagcaccaaaagaggcagttg |
547 |
Q |
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| T |
47037227 |
aacaaagcggcattagtttgaaacgtacaaaaaaaatttaacattgattcggttgctaaaaacaagtggatattgagataagcaccaaaagaggcagttg |
47037128 |
T |
|
| Q |
548 |
ttgatatgtagaatgagcgagacaggtgaaagaatagtagtgctcaatctcaaagagtgttttggagcttaccattccatttgttttttatgagtaggga |
647 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
47037127 |
ttgatatgtagaatgagcgagacaggtgaaagaatagtagtgctcaatctcaaagagtgttttggagcttaccataccatttgttttttatgagtaggga |
47037028 |
T |
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| Q |
648 |
ccatcaaga |
656 |
Q |
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||||||||| |
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| T |
47037027 |
ccatcaaga |
47037019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 100; E-Value: 5e-49
Query Start/End: Original strand, 719 - 822
Target Start/End: Complemental strand, 47036954 - 47036851
Alignment:
| Q |
719 |
atgaaaaagaatcaggagcacaattacagagtcatgtcggtattatatttatgataaatgcagttatgtttatcggttgtcatgtgaatgctctctgctc |
818 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47036954 |
atgaaaaagaatcaggagcacaattacagagtcatgtcggtattatatttatgataaatgcagttatgtttatcggttgtcatgtgaatgctctcttctc |
47036855 |
T |
|
| Q |
819 |
ctcc |
822 |
Q |
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|||| |
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| T |
47036854 |
ctcc |
47036851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 54
Target Start/End: Complemental strand, 47037688 - 47037650
Alignment:
| Q |
16 |
caaaggttcaatcccgcgaagtccaaatacagataaaga |
54 |
Q |
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| T |
47037688 |
caaaggttcaatcccgcgaagtccaaatacagataaaga |
47037650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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