View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_high_10 (Length: 495)

Name: NF3162_high_10
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_high_10
NF3162_high_10
[»] chr5 (3 HSPs)
chr5 (175-395)||(3821001-3821221)
chr5 (20-111)||(3820847-3820938)
chr5 (404-485)||(3821267-3821348)
[»] chr4 (4 HSPs)
chr4 (189-296)||(55860849-55860955)
chr4 (404-484)||(55860654-55860735)
chr4 (74-110)||(55861199-55861235)
chr4 (356-393)||(55860789-55860826)
[»] chr2 (3 HSPs)
chr2 (189-273)||(29273611-29273695)
chr2 (404-484)||(29273830-29273911)
chr2 (69-110)||(29273316-29273357)


Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 175 - 395
Target Start/End: Original strand, 3821001 - 3821221
Alignment:
Q  175 ctggtggtgcctgattgtcgtgatattgttctgtgtggtgctgatgctgtatttaatggttgtgtgcattcatttttctttcacaatcaaattcgtttcc 274  Q
    ||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  3821001 ctggtggtgtctgattgtggtgatattgttctgtgcggtgctgatgctgtatttaatggttatgtgcattcatttttctttcccaatcaaattcgtttcc 3821100  T
Q  275 agaattttgttttggcagtgagttttgctattgcaatggagatatgttggctgacattgttcatgggatggactcgaggagaattaagaatagggtaagt 374  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  3821101 agaactttgttttggcagtgagttttgctattgcaatggagatatgttggctgacattgttcatgggatggactccaggagaattaaaaatagggtaagt 3821200  T
Q  375 ttaacgtcaacttctccatta 395  Q
    |||||||||||||||||||||    
T  3821201 ttaacgtcaacttctccatta 3821221  T

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Target: chr5; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 20 - 111
Target Start/End: Original strand, 3820847 - 3820938
Alignment:
Q  20 atgaggacaatcaaaaaataagttacaatcagataatacggatttcgggcggtacttcaattcgggtccataatttctctgtggtggggttg 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3820847 atgaggacaatcaaaaaataagttacaatcagataatacggatttcgggcggtacttcaattcgggtccataatttctctgtggtggggttg 3820938  T

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Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 404 - 485
Target Start/End: Original strand, 3821267 - 3821348
Alignment:
Q  404 ttgctggtttgttcttgctattcttttattcgcttgaagcatctaccacatcaattcttggtaaatttctatcttccctatg 485  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3821267 ttgctggtttgttcttgctattcttttattcgcttgaagcatctaccacatcaattcttggtaaatttctatcttccctatg 3821348  T

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Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 189 - 296
Target Start/End: Complemental strand, 55860955 - 55860849
Alignment:
Q  189 ttgtcgtgatattgttctgtgtggtgctgatgctgtatttaatggttgtgtgcattcatttttctttcacaatcaaattcgtttccagaattttgttttg 288  Q
    ||||||||||| |||||||||||| ||||||| ||||| |||||||||| |||||||| ||||| |||||||||||||| |||| |||||||||  ||||    
T  55860955 ttgtcgtgatagtgttctgtgtggcgctgatgatgtatataatggttgtttgcattcagttttccttcacaatcaaatttgttt-cagaatttttgtttg 55860857  T
Q  289 gcagtgag 296  Q
    ||||||||    
T  55860856 gcagtgag 55860849  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 404 - 484
Target Start/End: Complemental strand, 55860735 - 55860654
Alignment:
Q  404 ttgctggtttgtt-cttgctattcttttattcgcttgaagcatctaccacatcaattcttggtaaatttctatcttccctat 484  Q
    ||||||||||||| |||||| |||||||||||| | |||||||  |||||||||||||| ||||||||||||||||||||||    
T  55860735 ttgctggtttgtttcttgctgttcttttattcgatggaagcattgaccacatcaattctcggtaaatttctatcttccctat 55860654  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 110
Target Start/End: Complemental strand, 55861235 - 55861199
Alignment:
Q  74 cttcaattcgggtccataatttctctgtggtggggtt 110  Q
    |||||||||||||||||||||||| ||||||||||||    
T  55861235 cttcaattcgggtccataatttctttgtggtggggtt 55861199  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 393
Target Start/End: Complemental strand, 55860826 - 55860789
Alignment:
Q  356 aattaagaatagggtaagtttaacgtcaacttctccat 393  Q
    ||||||| ||||||| ||||||||||||||||||||||    
T  55860826 aattaaggatagggtgagtttaacgtcaacttctccat 55860789  T

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Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 189 - 273
Target Start/End: Original strand, 29273611 - 29273695
Alignment:
Q  189 ttgtcgtgatattgttctgtgtggtgctgatgctgtatttaatggttgtgtgcattcatttttctttcacaatcaaattcgtttc 273  Q
    ||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||| ||||| |||||||||||||| |||||    
T  29273611 ttgtcgtgatagtgttctgtgtggcgctgatgatgtatataatggttgtgtgcattcagttttccttcacaatcaaatttgtttc 29273695  T

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Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 404 - 484
Target Start/End: Original strand, 29273830 - 29273911
Alignment:
Q  404 ttgctggtttgtt-cttgctattcttttattcgcttgaagcatctaccacatcaattcttggtaaatttctatcttccctat 484  Q
    ||||||||||||| |||||| |||||||||||| | |||||||  |||||||||||||||||||||||||||||||||||||    
T  29273830 ttgctggtttgtttcttgctgttcttttattcgatggaagcattgaccacatcaattcttggtaaatttctatcttccctat 29273911  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 29273316 - 29273357
Alignment:
Q  69 cggtacttcaattcgggtccataatttctctgtggtggggtt 110  Q
    |||||||| |||||||||||||||||||| ||||||||||||    
T  29273316 cggtacttgaattcgggtccataatttctttgtggtggggtt 29273357  T

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