View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_11 (Length: 491)
Name: NF3162_high_11
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 17 - 483
Target Start/End: Complemental strand, 8071487 - 8071021
Alignment:
| Q |
17 |
caaccctcagaatttcaggatctttccatgggcccttatccgaacgcatacatcctccttcatcagcgcatttacatttacctcctaaaaactcaggcaa |
116 |
Q |
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| T |
8071487 |
caaccctcagaatttcaggatctttccatgggcccttatccgaacgcatacatcctccttcatcagcgcatttacatttacctcctaaaaactcaggcaa |
8071388 |
T |
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| Q |
117 |
ttcactgacaaagaaaacacaatggaaattaagtcttaaagatggacaaagaaatacgaggagcgtaaaaataaagaatcaatttcagattatttgtcaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8071387 |
ttcactgacaaagaaaacacaatggaaattaagtcttaaagatggacaaagaaatacgaggagcgtaaaaataaagaatcaatttcagattatttgtcaa |
8071288 |
T |
|
| Q |
217 |
atgaagaaaccagatactgagatattcaatgcatttatgaactcacctttcgtcaattatttcaagcaacttactatcatacttgttgccaagaacctga |
316 |
Q |
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| T |
8071287 |
atgaagaaaccagatactgagatattcaatgcatttatgaactcacctttcgtcaattatttcaagcaacttactatcatacttgttgccaagaacctga |
8071188 |
T |
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| Q |
317 |
tcatatataaattaatataagtttcaatgacacaattttccaaacacaacaagcagaattaggataaggtctataggctcacattgatttttgctgtggt |
416 |
Q |
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| T |
8071187 |
tcatatataaattaatataagtttcaatgacacaattttccaaacacaacaagcagaattaggataaggtctataggctcacattgatttttgctgtggt |
8071088 |
T |
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| Q |
417 |
cttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
483 |
Q |
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| T |
8071087 |
cttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
8071021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 394 - 483
Target Start/End: Original strand, 32616380 - 32616469
Alignment:
| Q |
394 |
ctcacattgatttttgctgtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
483 |
Q |
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||||||| ||||||||| |||||||| || |||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||||| |
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| T |
32616380 |
ctcacatggatttttgcggtggtctttgggtcaaggaaagatttaacagtgttccacaacattctgaatccagaacctgcattgatgatg |
32616469 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 28 - 129
Target Start/End: Original strand, 32616040 - 32616141
Alignment:
| Q |
28 |
atttcaggatctttccatgggcccttatccgaacgcatacatcctccttcatcagcgcatttacatttacctcctaaaaactcaggcaattcactgacaa |
127 |
Q |
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| T |
32616040 |
atttctggatccttccatggacccttatcagaacgcatgcagcctccttgatcagcgcaggtacaagtacctcctaaaaactctggcaattcactggcaa |
32616139 |
T |
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| Q |
128 |
ag |
129 |
Q |
| |
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|| |
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| T |
32616140 |
ag |
32616141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 259 - 317
Target Start/End: Original strand, 32616239 - 32616297
Alignment:
| Q |
259 |
tcacctttcgtcaattatttcaagcaacttactatcatacttgttgccaagaacctgat |
317 |
Q |
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| T |
32616239 |
tcaccttgcatcaattatttcaagcaacttgctttggtacttgttgccaagaacctgat |
32616297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 5327884 - 5327798
Alignment:
| Q |
397 |
acattgatttttgctgtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
483 |
Q |
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| T |
5327884 |
acatggatttttgaggtggtcttgggatctaggaatgactttacagtgttccacaatagcctaaatccagaaccagcattgatgatg |
5327798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 483
Target Start/End: Complemental strand, 54774046 - 54773960
Alignment:
| Q |
397 |
acattgatttttgctgtggtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
483 |
Q |
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| T |
54774046 |
acatggatttttgaggtggtcttgggatctaggaatgactttacagtgttccacaatagcctaaatccagaaccagcattgatgatg |
54773960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 415 - 483
Target Start/End: Complemental strand, 26639429 - 26639361
Alignment:
| Q |
415 |
gtcttgggatcaaggaaggattttacagtgttccacagtattctaaatccagaacctgcattgatgatg |
483 |
Q |
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|||||||||||||||||||| || ||||||||||||| || |||||||| ||||| |||||||||||| |
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| T |
26639429 |
gtcttgggatcaaggaaggacttaacagtgttccacaaaatcctaaatcccgaaccagcattgatgatg |
26639361 |
T |
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