View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_12 (Length: 478)
Name: NF3162_high_12
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_12 |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 330
Target Start/End: Original strand, 2652640 - 2652953
Alignment:
| Q |
18 |
cttgttaacaattaccatagcttagctgaatagtaacaccaaaacagtctcatgtatgatgaaaaactgtttggcttattcaagcaccgatgaaaaggct |
117 |
Q |
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| T |
2652640 |
cttgttaacaattaccatagcttagctgaatagtaacaccaaaacagtctcatgtatgatgaaaaactgtttggcttattcaagcaccgatgaaaaggct |
2652739 |
T |
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| Q |
118 |
atcatttgctttccattagacaacacacattgcatcc-aagataaaaaatgtcaaaatgctaccaattttttcaattaaataaaaaagtctcaatgtctg |
216 |
Q |
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| T |
2652740 |
atcatttgctttccattagacaacacacattgcatcccaagataaaaaatgtcaaaatgctaccaattttttcaattaaataaaaaagtctcaatgtctg |
2652839 |
T |
|
| Q |
217 |
atgcacaaacatcacatcaaacaatcgctaagaacattaaatattaacaaagtcactaattaattccttcaaaatagaactacaaaggaacgattaaaca |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
2652840 |
atgcacaaacatcacatcaaacaatcgctaagaacattaaatattaacaaagtcactaattaattccttcaaagtagaactacaaaggaacaattaaaca |
2652939 |
T |
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| Q |
317 |
taaaatttgttcat |
330 |
Q |
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|||||||||||||| |
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| T |
2652940 |
taaaatttgttcat |
2652953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 361 - 467
Target Start/End: Original strand, 2652984 - 2653090
Alignment:
| Q |
361 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
460 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2652984 |
tacattcacatttctcattagactcaaaagaaactcacctacaattccatttgagaagtccactacccagttagttagcatctaactcactcattcactt |
2653083 |
T |
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| Q |
461 |
gatgatg |
467 |
Q |
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||||||| |
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| T |
2653084 |
gatgatg |
2653090 |
T |
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