View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_14 (Length: 452)
Name: NF3162_high_14
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_14 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 23 - 452
Target Start/End: Original strand, 40333914 - 40334343
Alignment:
| Q |
23 |
tgcatgaggatgatttgtagtgattttcaaatttctaaatataataagtgcatgtttgaatagacaatttgttagacaattatgagatgagtttggatcc |
122 |
Q |
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| T |
40333914 |
tgcatgaggatgatttgtagtgattttcaaatttctaaatataataagtgcatgtttgaatagacgatttgttagataattgtgagatgagtttggatcc |
40334013 |
T |
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| Q |
123 |
tcatatatttataaagatcctccttagaaagaaaatgatctttatttctttttcatttgaaaatggactctcaactacttgtggggattcaaacttgttt |
222 |
Q |
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| T |
40334014 |
tcatatatttataaagatcctccttagaaagaaaatgatctttatttctttttcatttgaaaatggactctcaactacttgtggggattcaaacttgttt |
40334113 |
T |
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| Q |
223 |
gtggtgcggttatagtatactttgaagcaaaaaactaagaagtattgtnnnnnnnntattagtgcaattcttcttactctaataacaaaaataagtatta |
322 |
Q |
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| T |
40334114 |
gtggtgcggttatagtatactttgaagcaaaaaactaagaagtattgtaaaaaaaatattagtgcaattcttcttactctaataacaaaaataagtatta |
40334213 |
T |
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| Q |
323 |
cataaaatctcccttnnnnnnngtgttaaataaaatcgttttaatttaactttgaacaaactaatatgaaatatgatataaatcgatcggttttcataaa |
422 |
Q |
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| T |
40334214 |
cataaaatctcccttaaaaaaagtgttaaataaaatcgttttaatttaactttgaacaaactaatataaaatatgatataactcgatcggttttcataaa |
40334313 |
T |
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| Q |
423 |
gcgagatccaaaaatatttgataatatatt |
452 |
Q |
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| T |
40334314 |
gcgagatccaaaaatatttgataatatatt |
40334343 |
T |
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