View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_17 (Length: 445)
Name: NF3162_high_17
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 14 - 430
Target Start/End: Original strand, 48372688 - 48373104
Alignment:
| Q |
14 |
aagggatcaagaagaagcacnnnnnnntgaaaggtcgcttttttagattggtttgcggatgaaacatgttttagtcacttatgtgattttgatctctgtc |
113 |
Q |
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| T |
48372688 |
aagggatcaagaagaagcacagaaaaatgaaaggtcgcttttttagattggtttgcggatgaaacatgttttagtcacttatgtgattttgatctctgtc |
48372787 |
T |
|
| Q |
114 |
tttgaaattgttactatccaatnnnnnnnntcaataaactatacacacattaataattgatctctgtctttgagtctatttttgttgtgtttaacatttt |
213 |
Q |
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| T |
48372788 |
tttgaaattgttactatccaataaaagaaatcaataaactatacacacattaataattgatctctgtctttgagtctatttttgttgtgtttaacatttt |
48372887 |
T |
|
| Q |
214 |
ttccctcctgtagttctgatccgttcagcataaaaacttcaaatgtaatgtgttttgcaatcaaacaacttgnnnnnnncacgaccgacggtaaatgaat |
313 |
Q |
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| T |
48372888 |
ttccctcctgtagttctgatccgttcagcataaaaacttcaaatgtaatgtgttttgcaatcaaacaacttgaaaaaaacacgaccgacggtaaatgaat |
48372987 |
T |
|
| Q |
314 |
agttcaaattatttgaatctttcatatttcatttgatgtgttgcaaattgtgcaattaaaaaacaagtttgacagactagtttgcataattttgttttgg |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48372988 |
agttcaaattatttgaatctttcatatttcatttgatgtgttgcaaattgtgcaattaaaaaacaagtttgacagactagtttgcataattttgttttgg |
48373087 |
T |
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| Q |
414 |
catagaattaaccaaat |
430 |
Q |
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|||||||||||||||| |
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| T |
48373088 |
gatagaattaaccaaat |
48373104 |
T |
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