View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_20 (Length: 434)
Name: NF3162_high_20
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_20 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 113 - 433
Target Start/End: Original strand, 6362638 - 6362954
Alignment:
| Q |
113 |
aaatagtacgattagtagttgttatatcaaactactatcaattgaagtttgttcaacttgatgtcaagtttgcatttctcgatggcaaacttgaggagca |
212 |
Q |
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| T |
6362638 |
aaatagtacgattagtagttgttatatcaaactactatcaattgaagtttgttcaacttgatgtcaagtctgcatttctcgattgcaaacttgaggagga |
6362737 |
T |
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| Q |
213 |
agtatatgttggaaaaccactcggcttgatagtcaaagatgaagaagataaggtattgaaacctaataaagatttatatatatagcttaaagcaagcacc |
312 |
Q |
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| T |
6362738 |
agtatatgttggaaaaccacagggcttcatagtcaaagatgaagaagataaggtattgaagcctaataaagatt----tatatagcttaaagcaagcacc |
6362833 |
T |
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| Q |
313 |
aagagcctataattagaattgatgagtttctcaaggaaaatggctacgcataatgcacagttgagcatggaatctatgtcaaaggtgccaatcagaacaa |
412 |
Q |
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| T |
6362834 |
aagagcctataattagaattgatgagtttctcaaggaaaatggctactcataatgcacagttgagcatggaatctatgtcaaaggtgccaatcagaacaa |
6362933 |
T |
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| Q |
413 |
tgtcaacatagtttgcttata |
433 |
Q |
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| T |
6362934 |
tgtcaacatagtttgcttata |
6362954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 6362166 - 6362218
Alignment:
| Q |
63 |
aagaaccacatttaacaatgtaagaataacttcagtcaggaaaagattataaa |
115 |
Q |
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| T |
6362166 |
aagaaccacatttaacaatgtaagaataacttcagtcaggaaaagattataaa |
6362218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 169 - 433
Target Start/End: Complemental strand, 12448403 - 12448141
Alignment:
| Q |
169 |
cttgatgtcaagtttgcatttctcgatggcaaacttgaggagcaagtatatgttggaaaaccactcggcttgatagtcaaagatgaagaagataaggtat |
268 |
Q |
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| T |
12448403 |
cttgatgtaaagtctgcatttctcaatgtcaaacttaaggatgaagtatatgttgatcaaccacagggcttcatagtcaaaggtgaagaagataaagtac |
12448304 |
T |
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| Q |
269 |
tgaaacctaataaagatttatatatatagcttaaagcaagcaccaagagcctataattagaa--ttgatgagtttctcaaggaaaatggctacgcataat |
366 |
Q |
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| T |
12448303 |
ttaagatcaacaaagctttatatg----gcttaaagcaatcacgaagaatctggaatatgacagttgatgaatttctcaagaaaaatggctactcagaat |
12448208 |
T |
|
| Q |
367 |
gcacagttgagcatggaatctatgtcaaaggtgccaatcagaacaatgtcaacatagtttgcttata |
433 |
Q |
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| T |
12448207 |
gcacaattgagcatgaaatttatgtcaaaggtaccaataagaacaacattgacatagtttgcctata |
12448141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 297 - 391
Target Start/End: Complemental strand, 36073580 - 36073484
Alignment:
| Q |
297 |
gcttaaagcaagcaccaagagcctataatt--agaattgatgagtttctcaaggaaaatggctacgcataatgcacagttgagcatggaatctatgt |
391 |
Q |
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| T |
36073580 |
gcttaaagcaagcaccaagagcctggaatataagaacatatgattttctcaagcaaaatagctactcaaaatgcacagttgagcatggaatctatgt |
36073484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 158 - 223
Target Start/End: Complemental strand, 55369788 - 55369723
Alignment:
| Q |
158 |
agtttgttcaacttgatgtcaagtttgcatttctcgatggcaaacttgaggagcaagtatatgttg |
223 |
Q |
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| T |
55369788 |
agtttgttcaactagatgtcaagtttgcgtttctcaatggcagacttaaggatgaagtatatgttg |
55369723 |
T |
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