View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_21 (Length: 428)
Name: NF3162_high_21
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_21 |
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Alignment Details
Target: chr3 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 13 - 411
Target Start/End: Original strand, 31533693 - 31534094
Alignment:
| Q |
13 |
gagataaatgtttgtagaacagaaaaacatatataccgtaagttg---ctatatgcagcattacacagaagcatgcaacagagtacaaacatacataaat |
109 |
Q |
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| T |
31533693 |
gagataaatgtttgtagaacagaaaaacatatataccgtaagttgttgctataagcagcattacatagaagcatgcaacagagtacaaacatacataaat |
31533792 |
T |
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| Q |
110 |
ggtatacatagcagtttttaacttctgcagaagaaaaataaattaactaaatttaaagatggagtaattagtgacacatagtattgaagattgagataaa |
209 |
Q |
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| T |
31533793 |
ggtatacatagcagtttttaacttctgcagaagaaaaataaattaactaaatttaaagatggagtaattagtgacacatagtattgaagattgagataaa |
31533892 |
T |
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| Q |
210 |
agggcttcacatgttatgtcactggttgaaggtagcaatgaaaccaataggtccttttcctgtaacagcagcttgaattgcaaagatgaggaaaaccacc |
309 |
Q |
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| T |
31533893 |
agggcttcacatgttatgtcactggttgaaggtagcaatgaaaccaataggtccttttcctgtaacagcagcttgaattgcaaagatgaggaaaaccacc |
31533992 |
T |
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| Q |
310 |
atggccaaacgagaatgcttaatctctgccaattgaagtctttctttctcttcaggatcactggccaaaccaagaggatcaaagaactttccacctgggt |
409 |
Q |
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| T |
31533993 |
atggccaaacgagaatgcttaatctctgccaattgaagtctttctttctcttcaggatcactggccaaaccaagaggatcaaagaactttccacctgggt |
31534092 |
T |
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| Q |
410 |
at |
411 |
Q |
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| T |
31534093 |
at |
31534094 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 334 - 411
Target Start/End: Original strand, 4671650 - 4671727
Alignment:
| Q |
334 |
tctgccaattgaagtctttctttctcttcaggatcactggccaaaccaagaggatcaaagaactttccacctgggtat |
411 |
Q |
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| T |
4671650 |
tctgccaattgaagtgttgctttcttttctggatcagatgctaaaccaagtgggtcaaagaattttccacctgggtat |
4671727 |
T |
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