View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3162_high_22 (Length: 415)
Name: NF3162_high_22
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_22 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 12 - 399
Target Start/End: Original strand, 34276328 - 34276717
Alignment:
| Q |
12 |
atgaacaacaaatattgcataatgcatatgacagaagacacacatcatgtaaaagttaaaacgggtcatgtccaaacatctgagatatctttatatatag |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34276328 |
atgagcaacaaatattgcataatgcatatgacagaagacacacatcatgtaaaagttaaaacgggtcatgtccaaacatctgagatatctttatatatag |
34276427 |
T |
|
| Q |
112 |
taaga--tttattttcttcaatactcaagaataaaacgaagatcgaaatctagattctaaagaaaaagataaaggagaaaaataatcatgtgaccccaaa |
209 |
Q |
| |
|
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34276428 |
taagagatttattttcttcagtactcaagaataaaacgaagatcgaaatctagattctaaagaaaaagataaaggagaaaaataatcatgtgaccccaaa |
34276527 |
T |
|
| Q |
210 |
tatccaagaagtaaactaaagcatatttaatgattcatgatagtacacaaaagttccaccatggtacagacatagctgatgagttacacagggtagtgtg |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34276528 |
tatccaagaagtaaactaaagcatatttaatgattcatgatagtacacaaaagttccaccatggtacagacatagctgatgagttacacagggtagtgtg |
34276627 |
T |
|
| Q |
310 |
tcttgcagtacatacaaatgcctgaccatcagggattacagttcattatcagatacaccattgacatcattattatttacactaactaaa |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34276628 |
tcttgcagtacatacaaatgcctgaccatcagggattacagttcattatcagatacaccattgacatcattattatttacactaactaaa |
34276717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University