View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_24 (Length: 408)
Name: NF3162_high_24
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 17 - 395
Target Start/End: Original strand, 2955927 - 2956305
Alignment:
| Q |
17 |
attcctcaaatacattttcttctattagtgaatatattgggttcatatgaatgataatgtattgttgattccgttttgagacaatccatgcttgtgctca |
116 |
Q |
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| T |
2955927 |
attcctcaaatacattttcttctactagtgaatatattgggttcatatgaatgataatgtattgttgattccgttttgagacaatccatgcttgtgctca |
2956026 |
T |
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| Q |
117 |
tcatccaaatgatttggctttaaagcattgataagatgatttggctgttaactgattatgttatttgttgtccttggtacaaaagcttctatcttgatga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2956027 |
tcatccaaatgatttggctttaaagcattgataagatgatttggctgttaactgattatgttatttgttgtccttggtacaaaagcttctatctagatga |
2956126 |
T |
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| Q |
217 |
aatggtttaaacattaatcaatgtgcttcaatttctttgattggatgaaatagcttatcgttccatccgggttcccattacaagtggttgtggaacatac |
316 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2956127 |
aacggtttaaacattaatcaatgtgcttcaatttctttgattggatgaaatagcttatcgttccatccgggttcccattacaagtggttgtggaacatac |
2956226 |
T |
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| Q |
317 |
tatctgttggaaccgatagtatgctagggagttgtatttgggtgcctttgagtgcggttcttggtttgtttcttcgtct |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2956227 |
tatctgttggaaccgatagtatgctagggagttgtatttgggtgcctttgagtgcggttcttggtttgtttcttcgtct |
2956305 |
T |
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