View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_25 (Length: 404)
Name: NF3162_high_25
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 356; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 20 - 387
Target Start/End: Complemental strand, 49168583 - 49168216
Alignment:
| Q |
20 |
ctttcctatacaccgcggctaatttagtttcttggacacaatatatctggattatttttcccgatcacttgtacacatccttcttttttgctactcccct |
119 |
Q |
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| T |
49168583 |
ctttcctatacaccgcggctaatttagtttcttggacacaatatatctggattatttttcccgatcacttgtacacatccttcttttttgctactcccct |
49168484 |
T |
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| Q |
120 |
caaccctctaaagttgtaacttataatcttcatgataaaattccttacttccacccacattgatcaggggctccacggctccacctccttcattagagtt |
219 |
Q |
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| T |
49168483 |
caaccctctaaagttgtaacttataatcttcatgataaaattccttacttccacccacattgatcaggggctccacggctccacctccttcattagagtt |
49168384 |
T |
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| Q |
220 |
accaatgccctgttttctctattttcatgaacatttaacggttgcgccaaccctccttcttcgcctgatttcactagaccgattccattcccaaactcct |
319 |
Q |
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| T |
49168383 |
accaatgccctgttttctctattttcatgaacatttaacggttgcgccaaccctccttcttcgcctgatttcactagaccgattccattcccaaactcct |
49168284 |
T |
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| Q |
320 |
tgtgctactactctagaatcactatgcaatattgtcaaggatttccattatgtactatcaacgaaggt |
387 |
Q |
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| T |
49168283 |
tgtgctactactctagaatcactatgcaataatgtcgaggatttccattatgtactatcaacaaaggt |
49168216 |
T |
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