View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_high_32 (Length: 369)

Name: NF3162_high_32
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_high_32
NF3162_high_32
[»] chr3 (18 HSPs)
chr3 (18-279)||(49987076-49987332)
chr3 (63-156)||(16772754-16772847)
chr3 (44-156)||(54886833-54886947)
chr3 (205-302)||(16772640-16772743)
chr3 (207-302)||(54886719-54886820)
chr3 (62-115)||(16772825-16772877)
chr3 (63-121)||(54994710-54994770)
chr3 (57-121)||(8638950-8639016)
chr3 (63-121)||(2386352-2386412)
chr3 (63-121)||(7197817-7197877)
chr3 (63-121)||(45826204-45826264)
chr3 (63-121)||(51274487-51274547)
chr3 (62-97)||(8728640-8728675)
chr3 (62-97)||(9080527-9080562)
chr3 (64-121)||(40976891-40976950)
chr3 (76-121)||(42510643-42510689)
chr3 (63-121)||(592602-592662)
chr3 (63-121)||(48637590-48637650)
[»] chr8 (10 HSPs)
chr8 (205-304)||(38198501-38198606)
chr8 (62-156)||(38198617-38198711)
chr8 (19-123)||(29857463-29857567)
chr8 (19-134)||(40993705-40993821)
chr8 (57-121)||(5176599-5176664)
chr8 (63-120)||(43506411-43506469)
chr8 (62-121)||(21661181-21661242)
chr8 (63-121)||(40254505-40254564)
chr8 (303-350)||(42302779-42302826)
chr8 (91-124)||(23990472-23990505)
[»] chr2 (10 HSPs)
chr2 (19-137)||(24060439-24060556)
chr2 (35-152)||(20936573-20936688)
chr2 (19-123)||(42599696-42599799)
chr2 (63-121)||(33789980-33790040)
chr2 (254-311)||(42599559-42599616)
chr2 (63-121)||(12324954-12325014)
chr2 (62-124)||(13218740-13218803)
chr2 (263-302)||(20936769-20936808)
chr2 (57-122)||(27659373-27659439)
chr2 (87-152)||(12301251-12301316)
[»] chr4 (7 HSPs)
chr4 (50-156)||(34522999-34523107)
chr4 (62-121)||(32992386-32992446)
chr4 (62-101)||(15739272-15739311)
chr4 (205-252)||(34522941-34522988)
chr4 (62-101)||(52177032-52177071)
chr4 (77-122)||(175458-175502)
chr4 (62-95)||(22072521-22072554)
[»] chr6 (6 HSPs)
chr6 (50-137)||(14345017-14345104)
chr6 (63-121)||(18133040-18133100)
chr6 (63-121)||(21535809-21535869)
chr6 (63-121)||(4303041-4303101)
chr6 (63-121)||(18131834-18131894)
chr6 (63-121)||(21395643-21395703)
[»] chr1 (9 HSPs)
chr1 (89-141)||(10045997-10046049)
chr1 (63-121)||(8089771-8089831)
chr1 (63-121)||(10582801-10582861)
chr1 (63-121)||(10584007-10584067)
chr1 (63-121)||(49122229-49122289)
chr1 (62-121)||(30038110-30038171)
chr1 (63-117)||(3815223-3815279)
chr1 (63-121)||(8788585-8788645)
chr1 (63-121)||(36346592-36346652)
[»] chr7 (8 HSPs)
chr7 (35-141)||(30640695-30640802)
chr7 (56-121)||(17901153-17901220)
chr7 (57-122)||(15039586-15039652)
chr7 (89-122)||(7175745-7175778)
chr7 (66-115)||(47746140-47746189)
chr7 (63-121)||(6081302-6081362)
chr7 (63-121)||(6082509-6082569)
chr7 (64-124)||(6398623-6398683)
[»] chr5 (11 HSPs)
chr5 (58-122)||(24150269-24150334)
chr5 (65-121)||(19139374-19139432)
chr5 (63-121)||(22950364-22950424)
chr5 (63-121)||(29526090-29526150)
chr5 (63-121)||(39701640-39701700)
chr5 (63-121)||(39702870-39702930)
chr5 (62-124)||(1886087-1886150)
chr5 (63-121)||(29527303-29527364)
chr5 (63-119)||(35144554-35144612)
chr5 (63-121)||(19934657-19934717)
chr5 (63-118)||(37473632-37473688)
[»] scaffold0026 (2 HSPs)
scaffold0026 (64-121)||(79623-79682)
scaffold0026 (63-121)||(80818-80878)
[»] scaffold0018 (1 HSPs)
scaffold0018 (63-121)||(177915-177975)
[»] scaffold0011 (2 HSPs)
scaffold0011 (63-121)||(205641-205701)
scaffold0011 (63-121)||(211718-211778)
[»] scaffold0063 (1 HSPs)
scaffold0063 (62-99)||(33902-33939)
[»] scaffold0227 (1 HSPs)
scaffold0227 (63-121)||(11177-11237)


Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 18 - 279
Target Start/End: Complemental strand, 49987332 - 49987076
Alignment:
Q  18 aaaaggaggaagtgatgatgggatatttt-ctaaatggttttgggtgggagagaccaaactctctaattcttggagggagagaccaagactctcgaattt 116  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49987332 aaaaggaggaagtgatgatgggatatttttctaaatggttttgggtgggagagaccaaactctctaattcttggagggagagaccaagactctcgaattt 49987233  T
Q  117 cttggatattaattgtgtataatatatctatccttagtttcccttnnnnnnnnnnnnntatatctttagtttatgtgtgaattctatatctatattatct 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||             | |||| |||||||||||||||||      ||||||||||||    
T  49987232 cttggatattaattgtgtataatatatctatccttagtttcccttaaaaaaataaaaatctatccttagtttatgtgtgaat------tctatattatct 49987139  T
Q  217 atagtgtgtgtaattgtttgttgtaagtgtttctgccaaaagacagtttctactactaaaatg 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  49987138 atagtgtgtgtaattgtttgttgtaagtgtttctgccaaaagacagtttctactgctaaaatg 49987076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 63 - 156
Target Start/End: Complemental strand, 16772847 - 16772754
Alignment:
Q  63 gggagagaccaaactctctaattcttggagggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatccttagttt 156  Q
    |||| ||||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||| ||||||    
T  16772847 gggaaagaccaagctctcgaattcttggagagagagaccaagactctcgaatttcttgaataataattgtgtataatatttctatccgtagttt 16772754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 44 - 156
Target Start/End: Complemental strand, 54886947 - 54886833
Alignment:
Q  44 tttctaaatggttttgggtgggagagaccaaactctctaattcttggagggagagaccaagactctcgaatttcttggatattaattgtgtataatata- 142  Q
    ||||| ||||||| ||||| ||||||||||| ||||| ||||||||||| ||| ||||||||||||||||||| || |||| ||| |||||||||||||     
T  54886947 tttctgaatggttatgggttggagagaccaagctctcgaattcttggagcgagtgaccaagactctcgaattttttagatagtaactgtgtataatatat 54886848  T
Q  143 -tctatccttagttt 156  Q
     ||||||||||||||    
T  54886847 ctctatccttagttt 54886833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 205 - 302
Target Start/End: Complemental strand, 16772743 - 16772640
Alignment:
Q  205 tctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgcc------aaaagacagtttctactactaaaatgtattttggtaccagtttct 298  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||      |||||||||||  || || |||||||||||||||||||| |||||    
T  16772743 tctatattatctataatgtgtgtaattgtttgttgtaagcgtttctgccgtcaataaaagacagttcatattattaaaatgtattttggtaccaatttct 16772644  T
Q  299 aaca 302  Q
    ||||    
T  16772643 aaca 16772640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 54886820 - 54886719
Alignment:
Q  207 tatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgcca------aaagacagtttctactactaaaatgtattttggtaccagtttctaa 300  Q
    ||||||||||| |||||  |||||||||| ||||||  || |||||||      ||||||||||||||| | ||||||||||||||||||||||||||||    
T  54886820 tatattatctacagtgtacgtaattgtttcttgtaaacgtgtctgccatcaataaaagacagtttctaccattaaaatgtattttggtaccagtttctaa 54886721  T
Q  301 ca 302  Q
    ||    
T  54886720 ca 54886719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 115
Target Start/End: Complemental strand, 16772877 - 16772825
Alignment:
Q  62 tgggagagaccaaactctctaattcttggagggagagaccaagactctcgaatt 115  Q
    ||||||||||||| |||||||||||||||||||| |||||||| ||||||||||    
T  16772877 tgggagagaccaagctctctaattcttggagggaaagaccaag-ctctcgaatt 16772825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 54994710 - 54994770
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  54994710 gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg 54994770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 8638950 - 8639016
Alignment:
Q  57 ttgggtgggagagaccaaactctctaattcttgg-agggagaga-ccaagactctcgaatttcttgg 121  Q
    |||| ||||||||| ||| ||||||||||||||| ||||||||| |||||||||||||| |||||||    
T  8638950 ttggttgggagagaacaagctctctaattcttggaagggagagacccaagactctcgaaattcttgg 8639016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 2386412 - 2386352
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| ||| |||||||||||||||||||    
T  2386412 gggagagaccaagctctcgaattcttggaggggagagaaccgagactctcgaatttcttgg 2386352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 7197817 - 7197877
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  7197817 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 7197877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 45826264 - 45826204
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||||||||| ||||||||||    
T  45826264 gggagagaccaagctctcgaattcttggaggggagagaaccaagactctctaatttcttgg 45826204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 51274487 - 51274547
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||| ||| |||||||||||||||||||||||    
T  51274487 gggagagaccaagctctcaaattcttggaggggggagaaccaagactctcgaatttcttgg 51274547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 8728640 - 8728675
Alignment:
Q  62 tgggagagaccaaactctctaattcttggagggaga 97  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8728640 tgggagagaccaaactctcgaattcttggagggaga 8728675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 97
Target Start/End: Original strand, 9080527 - 9080562
Alignment:
Q  62 tgggagagaccaaactctctaattcttggagggaga 97  Q
    ||||||||||||||||||| ||||||||||||||||    
T  9080527 tgggagagaccaaactctcgaattcttggagggaga 9080562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 40976891 - 40976950
Alignment:
Q  64 ggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    ||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||| ||||    
T  40976891 ggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaattttttgg 40976950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 121
Target Start/End: Original strand, 42510643 - 42510689
Alignment:
Q  76 ctctctaattcttggagggagaga-ccaagactctcgaatttcttgg 121  Q
    ||||| |||||||||||||||||| |||||||||||||||| |||||    
T  42510643 ctctcgaattcttggagggagagacccaagactctcgaattccttgg 42510689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 592602 - 592662
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    ||||||| |||| ||||| |||||||||| ||||||| |||||||| ||||||||||||||    
T  592602 gggagagcccaagctctcgaattcttggaggggagagaaccaagaccctcgaatttcttgg 592662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 48637650 - 48637590
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| |||||| ||||||| |||||||||||| ||||||||||    
T  48637650 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcaaatttcttgg 48637590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 205 - 304
Target Start/End: Complemental strand, 38198606 - 38198501
Alignment:
Q  205 tctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgcca------aaagacagtttctactactaaaatgtattttggtaccagtttct 298  Q
    |||||||||||||||||||||||| |||||||||||||| ||||| ||||      ||||||||||||||||| ||||||||||||||||||||||||||    
T  38198606 tctatattatctatagtgtgtgtagttgtttgttgtaagcgtttcggccatcaataaaagacagtttctactattaaaatgtattttggtaccagtttct 38198507  T
Q  299 aacaca 304  Q
    ||||||    
T  38198506 aacaca 38198501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 38198711 - 38198617
Alignment:
Q  62 tgggagagaccaaactctctaattcttggagggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatccttagttt 156  Q
    |||| |||||||| ||||| |||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  38198711 tgggtgagaccaagctctcaaattcttggagggagagaccgatactctcgaatttcttggatagtaattgtgtataatatatctatcattagttt 38198617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 29857567 - 29857463
Alignment:
Q  19 aaaggaggaagtgatgatgggatattttctaaatggttttgggtgggagagaccaaactctctaattcttggagggagagaccaagactctcgaatttct 118  Q
    ||||||| ||||||| |||||||| ||| | |||||||||| | | |||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  29857567 aaaggagaaagtgattatgggatagtttttgaatggttttgagagagagagaccaagctctctaattcttggagggagagaccaaaactctcgaatttct 29857468  T
Q  119 tggat 123  Q
    |||||    
T  29857467 tggat 29857463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 40993705 - 40993821
Alignment:
Q  19 aaaggaggaagtgatgatgggatattttctaaatggttttgggtgggagagaccaaactctc-taattcttggagggagagaccaagactctcgaatttc 117  Q
    ||||||| ||||||  |||||||| ||| | |||| ||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||   ||||    
T  40993705 aaaggagaaagtgacaatgggatagtttttgaatgattttgggtgggagagaccaaactctcagaattcttggagggagagaccaagactatcaggtttc 40993804  T
Q  118 ttggatattaattgtgt 134  Q
    ||||||| |||||||||    
T  40993805 ttggatagtaattgtgt 40993821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 57 - 121
Target Start/End: Complemental strand, 5176664 - 5176599
Alignment:
Q  57 ttgggtgggagagaccaaactctctaattcttggagggagaga-ccaagactctcgaatttcttgg 121  Q
    |||| ||||||||||||| ||||| |||||||||||||||||| |||||||||||||||| |||||    
T  5176664 ttggttgggagagaccaagctctcgaattcttggagggagagacccaagactctcgaattccttgg 5176599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 43506469 - 43506411
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagagaccaagactctcgaatttcttg 120  Q
    |||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||    
T  43506469 gggagagaccaagctctctaattcttcaaagggagagaccaagactctcgaatttcttg 43506411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 21661181 - 21661242
Alignment:
Q  62 tgggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    ||||||||||||| ||||| |||| |||||||| ||||| ||||||||||||||||||||||    
T  21661181 tgggagagaccaagctctcgaattattggaggggagagaaccaagactctcgaatttcttgg 21661242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 40254505 - 40254564
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||||||||||||| ||||| ||||||||||||||||||||||    
T  40254505 gggagagaccaagctctc-aattcttggaggggagagaaccaagactctcgaatttcttgg 40254564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 303 - 350
Target Start/End: Original strand, 42302779 - 42302826
Alignment:
Q  303 caagatttctaagttggtggtgactttcacttgcattcataaacactt 350  Q
    |||| ||||||||||| ||||||||| | |||||||||||||||||||    
T  42302779 caagctttctaagttgatggtgacttccgcttgcattcataaacactt 42302826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 124
Target Start/End: Original strand, 23990472 - 23990505
Alignment:
Q  91 agggagagaccaagactctcgaatttcttggata 124  Q
    ||||||||||||||||||||||| ||||||||||    
T  23990472 agggagagaccaagactctcgaacttcttggata 23990505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 63; Significance: 3e-27; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 137
Target Start/End: Original strand, 24060439 - 24060556
Alignment:
Q  19 aaaggaggaagtgatgatgggatattttctaaatggttttgggtgggagagaccaaactctctaattcttggagggagagaccaagactctcgaatttct 118  Q
    ||||||| ||||||| ||||||| |||||| | | ||| |||| |||||||||||| |||||||||||||||| |||||| | |||||||||||||||||    
T  24060439 aaaggagaaagtgattatgggat-ttttctgatttgttatgggagggagagaccaagctctctaattcttggatggagaggcgaagactctcgaatttct 24060537  T
Q  119 tggatattaattgtgtata 137  Q
    |||||| ||||||||||||    
T  24060538 tggatagtaattgtgtata 24060556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 35 - 152
Target Start/End: Original strand, 20936573 - 20936688
Alignment:
Q  35 atgggatattttctaaatggttttgggtgggagagaccaaactctctaattcttggagggagagaccaagactctcgaatttcttggatattaattgtgt 134  Q
    |||||||| ||| | |||||||||| | || | ||||||| ||||| |||||||| ||||||||||  ||||||| |||||||||||||| |||||||||    
T  20936573 atgggatagtttttgaatggttttgagaggtaaagaccaagctctcgaattcttgaagggagagac--agactcttgaatttcttggatagtaattgtgt 20936670  T
Q  135 ataatatatctatcctta 152  Q
    ||||||| ||| ||||||    
T  20936671 ataatatctctttcctta 20936688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 123
Target Start/End: Complemental strand, 42599799 - 42599696
Alignment:
Q  19 aaaggaggaagtgatgatgggatattttctaaatggttttgggtgggagagaccaaactctctaattcttgg-agggagagaccaagactctcgaatttc 117  Q
    ||||||| |||||||||||||||| ||| |  ||||||||||| ||  |||||||| || || ||||||||| ||||||| ||||||||||| |||||||    
T  42599799 aaaggagaaagtgatgatgggatagtttttgcatggttttgggagg--gagaccaagctttcaaattcttggaagggagaaaccaagactcttgaatttc 42599702  T
Q  118 ttggat 123  Q
    ||||||    
T  42599701 ttggat 42599696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 33789980 - 33790040
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  33789980 gggagagaccaagctctcaaattcttggaggggagagaaccaagactctcgaatttcttgg 33790040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 254 - 311
Target Start/End: Complemental strand, 42599616 - 42599559
Alignment:
Q  254 aaaagacagtttctactactaaaatgtattttggtaccagtttctaacacaagatttc 311  Q
    ||||| || ||||||||| |||||| ||||||||||| |||||||||||||| |||||    
T  42599616 aaaagtcaatttctactattaaaatatattttggtactagtttctaacacaatatttc 42599559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 12324954 - 12325014
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||||||||| |||| ||||| ||||||| ||||||||||||||||| |||||    
T  12324954 gggagagaccaaactctcgaatttttggaggggagagaaccaagactctcgaattccttgg 12325014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 13218803 - 13218740
Alignment:
Q  62 tgggagagaccaaactctctaattcttgga-gggagagaccaagactctcgaatttcttggata 124  Q
    ||||||||||||| ||||| |||||||| | |||||||||| | ||||| ||||||||||||||    
T  13218803 tgggagagaccaagctctcgaattcttgcaagggagagacccaaactcttgaatttcttggata 13218740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 263 - 302
Target Start/End: Original strand, 20936769 - 20936808
Alignment:
Q  263 tttctactactaaaatgtattttggtaccagtttctaaca 302  Q
    ||||||||| ||||||||||||||||||| ||||||||||    
T  20936769 tttctactattaaaatgtattttggtacccgtttctaaca 20936808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 122
Target Start/End: Complemental strand, 27659439 - 27659373
Alignment:
Q  57 ttgggtgggagagaccaaactctctaattcttgga-gggagagaccaagactctcgaatttcttgga 122  Q
    ||||| |||| |||||||  ||||||||| || || ||||||||||||||||||||||||| |||||    
T  27659439 ttgggagggaaagaccaagttctctaattttttgaagggagagaccaagactctcgaattttttgga 27659373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 12301316 - 12301251
Alignment:
Q  87 ttggagggagagaccaagactctcgaatttcttggatattaattgtgtataatatatctatcctta 152  Q
    |||||| |||||||  |||||| ||||||||||||||| ||||||| || ||||| ||| ||||||    
T  12301316 ttggagagagagactgagactcccgaatttcttggatagtaattgtatacaatatttctttcctta 12301251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 50 - 156
Target Start/End: Complemental strand, 34523107 - 34522999
Alignment:
Q  50 aatggttttgggtgggagagaccaaa-ctctctaattcttggagggagagaccaagactctcgaatttcttggatattaattgtgt-ataatatatctat 147  Q
    ||||||||| |  ||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| ||| |    
T  34523107 aatggttttcgaagggagagaccaaagctctcgagttcttggagggagagaccaagactctcgaatttcttggatagtaattgtgtcataatatctcttt 34523008  T
Q  148 ccttagttt 156  Q
    |||||||||    
T  34523007 ccttagttt 34522999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 121
Target Start/End: Original strand, 32992386 - 32992446
Alignment:
Q  62 tgggagagaccaaactctctaattcttggagggagaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||| || ||||| | |||||||||||||||| |||||||||||||||| |||||    
T  32992386 tgggagagacaaagctctcgagttcttggagggagagacccaagactctcgaattccttgg 32992446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 15739272 - 15739311
Alignment:
Q  62 tgggagagaccaaactctctaattcttggagggagagacc 101  Q
    ||||||||| ||||||||| ||||||||||||||||||||    
T  15739272 tgggagagatcaaactctcgaattcttggagggagagacc 15739311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 34522988 - 34522941
Alignment:
Q  205 tctatattatctatagtgtgtgtaattgtttgttgtaagtgtttctgc 252  Q
    |||| |||||||||||| | |||||||||||||||||| |||||||||    
T  34522988 tctacattatctatagtttatgtaattgtttgttgtaaatgtttctgc 34522941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 101
Target Start/End: Original strand, 52177032 - 52177071
Alignment:
Q  62 tgggagagaccaaactctctaattcttggagggagagacc 101  Q
    ||||||||||||||||| | ||||||||||||||||||||    
T  52177032 tgggagagaccaaactcccaaattcttggagggagagacc 52177071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 175502 - 175458
Alignment:
Q  77 tctctaattcttggagggagagaccaagactctcgaatttcttgga 122  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||    
T  175502 tctctaattcttggaag-agagaccaagactctcaaatttcttgga 175458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 95
Target Start/End: Original strand, 22072521 - 22072554
Alignment:
Q  62 tgggagagaccaaactctctaattcttggaggga 95  Q
    ||||||||||||||||||| ||||||||||||||    
T  22072521 tgggagagaccaaactctcgaattcttggaggga 22072554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 50 - 137
Target Start/End: Original strand, 14345017 - 14345104
Alignment:
Q  50 aatggttttgggtgggagagaccaaactctctaattcttggagggagagaccaagactctcgaatttcttggatattaattgtgtata 137  Q
    ||||||||||||  ||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||||||| || || ||||||    
T  14345017 aatggttttgggacggagagaccaagctctcgaattcatggagggaaagaccaagactctcgaatttcttggataatatttatgtata 14345104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 18133100 - 18133040
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  18133100 gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg 18133040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 21535809 - 21535869
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  21535809 gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg 21535869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 4303041 - 4303101
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| ||||||||||| |||||||||||    
T  4303041 gggagagaccaagctctcgaattcttggaggggagagaaccaagactctagaatttcttgg 4303101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 18131894 - 18131834
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| |||||| |||||||| ||||||||||||||||||||||    
T  18131894 gggagagaccaagctctcgaatacttggaagggagagaaccaagactctcgaatttcttgg 18131834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 21395703 - 21395643
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggaga-gaccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||  ||||||||||| |||||||||||    
T  21395703 gggagagaccaagctctcgaattcttggaggggagacaaccaagactcttgaatttcttgg 21395643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 89 - 141
Target Start/End: Complemental strand, 10046049 - 10045997
Alignment:
Q  89 ggagggagagaccaagactctcgaatttcttggatattaattgtgtataatat 141  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||    
T  10046049 ggagggagaggccaagactctcgaatttcttggatagtaattgtgtataatat 10045997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 8089831 - 8089771
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  8089831 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 8089771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 10582801 - 10582861
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  10582801 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 10582861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 10584007 - 10584067
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  10584007 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 10584067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 49122229 - 49122289
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  49122229 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 49122289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 30038171 - 30038110
Alignment:
Q  62 tgggagagaccaaactctctaattcttgg-agggagagacc-aagactctcgaatttcttgg 121  Q
    ||||||||||||||||||  ||||||||| ||||||||||| | |||||| |||||||||||    
T  30038171 tgggagagaccaaactcttgaattcttggaagggagagaccgacgactcttgaatttcttgg 30038110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 117
Target Start/End: Original strand, 3815223 - 3815279
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttc 117  Q
    |||||||||||| | ||| |||||||||| ||||||| |||||||||||||||||||    
T  3815223 gggagagaccaagcactcgaattcttggaggggagagaaccaagactctcgaatttc 3815279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 8788645 - 8788585
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| || || |||||||||| ||||||| |||||||||||| ||||||||||    
T  8788645 gggagagaccaagctttcgaattcttggaggggagagaaccaagactctctaatttcttgg 8788585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 36346652 - 36346592
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||| ||| ||||| ||||| ||||||| ||||| ||||||||||||||||||||||    
T  36346652 gggagagatcaagctctcgaattcatggaggggagagaaccaagactctcgaatttcttgg 36346592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 35 - 141
Target Start/End: Original strand, 30640695 - 30640802
Alignment:
Q  35 atgggatattttctaaatggttttgggtgggagagaccaaactctctaattcttggaggg-agagaccaagactctcgaatttcttggatattaattgtg 133  Q
    |||||||| ||| | ||||| |||||| |||||||||||| ||||  |||||||||| || |||||||||| ||||| |||||||||| || ||| ||||    
T  30640695 atgggatagtttttgaatgggtttgggagggagagaccaagctcttgaattcttggaaggcagagaccaaggctctcaaatttcttggctagtaactgtg 30640794  T
Q  134 tataatat 141  Q
    ||||||||    
T  30640795 tataatat 30640802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 17901153 - 17901220
Alignment:
Q  56 tttgggtgggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||| |||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  17901153 tttgggagggagagaccaagctctcgaattcttggaggggagagtaccaagactctcgaatttcttgg 17901220  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 122
Target Start/End: Original strand, 15039586 - 15039652
Alignment:
Q  57 ttgggtgggagagaccaaactctctaattcttgga-gggagagaccaagactctcgaatttcttgga 122  Q
    ||||| |||||||| |||  ||||||||||||||| |||||||||||||||||||  ||||||||||    
T  15039586 ttgggagggagagatcaaggtctctaattcttggaagggagagaccaagactctcacatttcttgga 15039652  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 122
Target Start/End: Complemental strand, 7175778 - 7175745
Alignment:
Q  89 ggagggagagaccaagactctcgaatttcttgga 122  Q
    ||||||||||||||||||||||||||||||||||    
T  7175778 ggagggagagaccaagactctcgaatttcttgga 7175745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 47746189 - 47746140
Alignment:
Q  66 agagaccaaactctctaattcttggagggagagaccaagactctcgaatt 115  Q
    ||||||||| | ||| |||||||||||||||||||||||| |||||||||    
T  47746189 agagaccaagccctcgaattcttggagggagagaccaagaatctcgaatt 47746140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 6081302 - 6081362
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  6081302 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 6081362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 6082509 - 6082569
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  6082509 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 6082569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 124
Target Start/End: Original strand, 6398623 - 6398683
Alignment:
Q  64 ggagagaccaaactctctaattcttgga-gggagagaccaagactctcgaatttcttggata 124  Q
    ||||||| ||| ||||| | |||||||| ||||||||||||||||||| |||||||||||||    
T  6398623 ggagagagcaagctctcaatttcttggacgggagagaccaagactctc-aatttcttggata 6398683  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 24150269 - 24150334
Alignment:
Q  58 tgggtgggagagaccaaactctctaattcttgg-agggagagaccaagactctcgaatttcttgga 122  Q
    |||| |||||||||||| ||||||||||||||| |||||| |||||||||| || |||||||||||    
T  24150269 tgggagggagagaccaagctctctaattcttggaagggagggaccaagactgtcaaatttcttgga 24150334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 121
Target Start/End: Original strand, 19139374 - 19139432
Alignment:
Q  65 gagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||| ||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||    
T  19139374 gagaaaccaagctctctaattcttggaggggagagaaccaagactctcgaatttcttgg 19139432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 22950364 - 22950424
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  22950364 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 22950424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 29526150 - 29526090
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| ||||||||||||| |||||||||    
T  29526150 gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcggatttcttgg 29526090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 39701700 - 39701640
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  39701700 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 39701640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 39702930 - 39702870
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  39702930 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 39702870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 1886087 - 1886150
Alignment:
Q  62 tgggagagaccaaactctctaattcttgga-gggagagaccaagactctcgaatttcttggata 124  Q
    ||||||||||||||||||  ||||||| || ||||||||| |||| |||| |||||||||||||    
T  1886087 tgggagagaccaaactcttgaattcttagaagggagagactaagaatctcaaatttcttggata 1886150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 29527364 - 29527303
Alignment:
Q  63 gggagagaccaaactctctaattcttggagggagaga---ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||  ||||||||||||| ||||   ||||||||||||||||||||||    
T  29527364 gggagagaccaagctcttgaattcttggagggggagagaaccaagactctcgaatttcttgg 29527303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 35144612 - 35144554
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttctt 119  Q
    ||||||||||||  |||| ||||||||||||| ||||| ||||||||||||||||||||    
T  35144612 gggagagaccaaggtctcgaattcttggaggggagagaaccaagactctcgaatttctt 35144554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 19934657 - 19934717
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| |||||| ||||||| ||||||||||| |||||||||||    
T  19934657 gggagagaccaagctctcgaatacttggaggggagagaaccaagactcttgaatttcttgg 19934717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 118
Target Start/End: Original strand, 37473632 - 37473688
Alignment:
Q  63 gggagagaccaaactctctaattcttggagggagaga-ccaagactctcgaatttct 118  Q
    |||||||||||| ||||| |||||||||| ||||||| ||| |||||||||| ||||    
T  37473632 gggagagaccaagctctcgaattcttggacggagagacccaggactctcgaagttct 37473688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 121
Target Start/End: Original strand, 79623 - 79682
Alignment:
Q  64 ggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    ||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||||||||    
T  79623 ggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttcttgg 79682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 80818 - 80878
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagag-accaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| |||||||||| ||||||| |||||||||||||||||| ||||    
T  80818 gggagagaccaagctctcgaattcttggaggggagagaaccaagactctcgaatttattgg 80878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 177975 - 177915
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  177975 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 177915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 205701 - 205641
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  205701 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 205641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 211778 - 211718
Alignment:
Q  63 gggagagaccaaactctctaattcttggaggg-agaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||| ||||||||| ||||| ||||||||||||||||||||||    
T  211778 gggagagaccaagctctcgaatacttggaggggagagaaccaagactctcgaatttcttgg 211718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 99
Target Start/End: Original strand, 33902 - 33939
Alignment:
Q  62 tgggagagaccaaactctctaattcttggagggagaga 99  Q
    ||||||||||||| ||||| ||||||||||||||||||    
T  33902 tgggagagaccaagctctcgaattcttggagggagaga 33939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 11177 - 11237
Alignment:
Q  63 gggagagaccaaactctctaattcttgga-gggagaga-ccaagactctcgaatttcttgg 121  Q
    |||||||||||| ||||| ||  |||||| |||||||| ||||||||||||||||||||||    
T  11177 gggagagaccaagctctcgaaaacttggaagggagagaaccaagactctcgaatttcttgg 11237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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