View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_high_36 (Length: 353)

Name: NF3162_high_36
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_high_36
NF3162_high_36
[»] chr8 (9 HSPs)
chr8 (20-348)||(2012449-2012777)
chr8 (232-333)||(2019246-2019347)
chr8 (216-348)||(1968048-1968181)
chr8 (176-308)||(1964450-1964581)
chr8 (227-333)||(2008849-2008956)
chr8 (235-333)||(2013396-2013494)
chr8 (232-333)||(1962465-1962566)
chr8 (236-333)||(2015863-2015960)
chr8 (235-309)||(2005493-2005567)
[»] chr3 (2 HSPs)
chr3 (169-343)||(18189366-18189541)
chr3 (101-162)||(18189278-18189339)
[»] chr1 (1 HSPs)
chr1 (232-349)||(5901644-5901761)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 348
Target Start/End: Complemental strand, 2012777 - 2012449
Alignment:
Q  20 ctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagttgtgaaatgcagat 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2012777 ctcagttattgtcctatatgtatctaacaattataaggtagtgttgactatagggtgaaattctcaatattgtgttaggtagaagttgtgaaatgcagat 2012678  T
Q  120 atactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgagtttcattcatgaa 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2012677 atactggtgcataccaaaatatcttaaaaccaaactttcaaccatgaacttggctttaaaatctatacaagtctttggctaggtgagtttcattcatgaa 2012578  T
Q  220 attggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttactt 319  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  2012577 cttggcctcaaatttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcatttctcaaagttactt 2012478  T
Q  320 atccagcttcatccggacattcatctcac 348  Q
    |||||||||||||||||||||||| ||||    
T  2012477 atccagcttcatccggacattcatgtcac 2012449  T

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Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 333
Target Start/End: Complemental strand, 2019347 - 2019246
Alignment:
Q  232 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 331  Q
    ||||||||| |||||| |||| ||||| |||||||||||||| || ||||| |||||| |||| |||||||||||||| ||| ||||| | |||||||||    
T  2019347 tttcatggagaaaacagttcatattgcagttgttccaggtgttggatatggccacttattcccgattcttcaattctccaagctacttgttcagcttcat 2019248  T
Q  332 cc 333  Q
    ||    
T  2019247 cc 2019246  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 216 - 348
Target Start/End: Original strand, 1968048 - 1968181
Alignment:
Q  216 tgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagt 314  Q
    |||| ||| ||||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| |||     
T  1968048 tgaacttgacctcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagtcatttggtccctattcttcaattctccaaga 1968147  T
Q  315 tacttatccagcttcatccggacattcatctcac 348  Q
     |||| | || |||||||| ||| ||||| ||||    
T  1968148 gacttgttcaacttcatccagactttcatgtcac 1968181  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 308
Target Start/End: Original strand, 1964450 - 1964581
Alignment:
Q  176 taaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtc 274  Q
    ||||||||||| | ||||| |||||||||| ||||||    ||| |||| ||| |||||| ||||| ||||| ||||||||||| ||||||||||||||     
T  1964450 taaaatctatataggtcttgggctaggtgactttcat----gaacttggtctctaatttccatggagaaaaccattcacattgcagttgttccaggtgtt 1964545  T
Q  275 gggtatgga--cacttagtccctattcttcaattct 308  Q
    ||||||  |  || |||||| |||||||||||||||    
T  1964546 gggtatatatccatttagtctctattcttcaattct 1964581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 227 - 333
Target Start/End: Complemental strand, 2008956 - 2008849
Alignment:
Q  227 tcaaatttc-atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccag 325  Q
    ||||||||| ||||| |||||| |||| ||||| |||||||||||||| || ||| | || || |||||||||||||||||||| |||  |||| | |||    
T  2008956 tcaaatttccatggagaaaacagttcatattgcagttgttccaggtgttggatatagccatttggtccctattcttcaattctccaagagacttgttcag 2008857  T
Q  326 cttcatcc 333  Q
    ||||||||    
T  2008856 cttcatcc 2008849  T

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Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 2013494 - 2013396
Alignment:
Q  235 catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc 333  Q
    |||||| |||| |||||| ||||| |||||||||||||| || ||| | |||||| |||| ||||||||||| || ||| ||||| | |||||||||||    
T  2013494 catggagaaaaaaattcatattgcagttgttccaggtgttggatatagtcacttattcccaattcttcaattttcgaagctacttgttcagcttcatcc 2013396  T

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Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 232 - 333
Target Start/End: Original strand, 1962465 - 1962566
Alignment:
Q  232 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 331  Q
    ||||||||| |||||| |||| ||||| |||||||| ||||| || ||| | |||||| |||| |||||||||||||| ||  ||||| | |||||||||    
T  1962465 tttcatggagaaaacagttcatattgcagttgttcctggtgttggatatagccacttattcccaattcttcaattctccaaactacttgttcagcttcat 1962564  T
Q  332 cc 333  Q
    ||    
T  1962565 cc 1962566  T

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Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 333
Target Start/End: Complemental strand, 2015960 - 2015863
Alignment:
Q  236 atggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatcc 333  Q
    ||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| |||||||||||||||| |||  |||| | |||||||||||    
T  2015960 atggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctccaagagacttgttcagcttcatcc 2015863  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 309
Target Start/End: Complemental strand, 2005567 - 2005493
Alignment:
Q  235 catggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctc 309  Q
    |||||| ||||||||||| ||||| |||||||||||||| || ||| | || || ||| ||||||||||||||||    
T  2005567 catggagaaaacaattcatattgcagttgttccaggtgttggatatagccatttggtctctattcttcaattctc 2005493  T

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Target: chr3 (Bit Score: 124; Significance: 1e-63; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 169 - 343
Target Start/End: Original strand, 18189366 - 18189541
Alignment:
Q  169 ttggctttaaaatctatacaagtctttggctaggtgagtttcattcatgaaattggcctcaaatttc-atggataaaacaattcacattgccgttgttcc 267  Q
    ||||||||||||||||||||||| |||||||   ||||||||||||||||| || || ||||||||| ||||||||||||||||||||||| ||||||||    
T  18189366 ttggctttaaaatctatacaagtttttggctgcatgagtttcattcatgaacttagcatcaaatttccatggataaaacaattcacattgcagttgttcc 18189465  T
Q  268 aggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcatccggacattcat 343  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  18189466 aggtgttgggtatggacacttagtccctattcttcaattctcaaagttacttatccatcttcatccagacattcat 18189541  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 18189278 - 18189339
Alignment:
Q  101 gaagttgtgaaatgcagatatactggtgcataccaaaatatcttaaaaccaaactttcaacc 162  Q
    |||||||||||||  ||| | ||||||  ||||||||| |||||||||||||||||||||||    
T  18189278 gaagttgtgaaatatagaaacactggtttataccaaaaaatcttaaaaccaaactttcaacc 18189339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 232 - 349
Target Start/End: Original strand, 5901644 - 5901761
Alignment:
Q  232 tttcatggataaaacaattcacattgccgttgttccaggtgtcgggtatggacacttagtccctattcttcaattctcaaagttacttatccagcttcat 331  Q
    ||||||||| ||||||||||||||||| ||| |||||||||   ||||| | || |||||| |||||||| ||||||| ||| ||||| | ||||| |||    
T  5901644 tttcatggagaaaacaattcacattgctgttattccaggtgcttggtatagccatttagtctctattcttgaattctccaagctacttgttcagctccat 5901743  T
Q  332 ccggacattcatctcact 349  Q
    || ||| ||||| |||||    
T  5901744 ccagactttcatgtcact 5901761  T

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