View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_4 (Length: 620)
Name: NF3162_high_4
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 13 - 401
Target Start/End: Complemental strand, 41741421 - 41741033
Alignment:
| Q |
13 |
aatatcaaaatttacatgtaagttccatcaaatagacaaacatatcccttttatattaacatcattaaatttccttatagtaatttcttagagaatttct |
112 |
Q |
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| T |
41741421 |
aatatcaaaatttatacataagttccatcaaatagacaaacatatcccttttatattaacatcattaaatttccttatagtaatttcttagagaatttct |
41741322 |
T |
|
| Q |
113 |
tcttaacattaaatagacattcttgaattacaagtgggaagacaaaaagtaatggcaaaagacaaccatccattattgaattcaccattgatagtcaatt |
212 |
Q |
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| T |
41741321 |
tcttaacattaaatagacattcttgaattacaagtgggaagacaaaaagtaatggcaaaagacaaccctccattattgaattcaccattgatagtcaatt |
41741222 |
T |
|
| Q |
213 |
caatgatgtcatcaacaaaattcaaatacagagtatgggtatgaattaaaagaagtcattgttcattctcaaacatattcggatttgaggatgaagattg |
312 |
Q |
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| T |
41741221 |
caatgatgtcatcaacaaaattcaaatacagagtatgggtatgaattaaaagaagtcattgttcattctcaaacatattcggatttgaggatgaagattg |
41741122 |
T |
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| Q |
313 |
aaacaacaatggaaagattaaatcaaagaataaatagaattagaaacacgtaaatagtcaaccgataatgggtcttggtttgcaactcg |
401 |
Q |
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| T |
41741121 |
aaacaacaatggaaagattaaatcaaagactaaatagaattagaaacacgtaaatagtcaaccgataatgggtcttggtttgcaactcg |
41741033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 432 - 577
Target Start/End: Complemental strand, 41741002 - 41740857
Alignment:
| Q |
432 |
gtactctttactcatcctctattgtttataaacaatttacaagtggctcgaaccgaattaaaaaagcattcgaaagagtttaacattagaggatctttag |
531 |
Q |
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| T |
41741002 |
gtactctttactcatcctctattgtttataaacaatttacaagtggctcgaaccgaattaaaaaagcattcgaaagagtttaacattagaggatctttag |
41740903 |
T |
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| Q |
532 |
ctcnnnnnnntgctttgagtagtaaataataccattagtcgcatta |
577 |
Q |
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| T |
41740902 |
ctcaaaaaaatgctttgagtagtaaataataccattagtcgcatta |
41740857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 14686562 - 14686457
Alignment:
| Q |
135 |
ttgaattacaagtgggaagacaaaaagtaatggcaaaagacaaccatccattattgaattcaccattgatagtcaattcaatgatgtcatcaacaaaatt |
234 |
Q |
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|||| |||| ||||||| |||| |||| ||| ||||||||||| | ||||||||||| | || || |||||| |||| || | ||| ||||||| |||| |
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| T |
14686562 |
ttgacttactagtgggatgacagaaagaaatagcaaaagacaaacctccattattgagtccatcagtgatagccaatccactaatgccatcaaccaaatc |
14686463 |
T |
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| Q |
235 |
caaata |
240 |
Q |
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|||||| |
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| T |
14686462 |
caaata |
14686457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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