View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_40 (Length: 346)
Name: NF3162_high_40
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_40 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 172 - 336
Target Start/End: Complemental strand, 7335218 - 7335054
Alignment:
| Q |
172 |
ggattttgccgttgattttggtggttagcttttcttggcgctggtcgtagtcttcggttgggttggttgggtggtgtctttattggtgtttttgatatac |
271 |
Q |
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| T |
7335218 |
ggattttgccgttgattttggtggttagcttttcttggctctggtcgtagtcttcggttgggttggttgggtggtgtctttattggtgtttttgatatac |
7335119 |
T |
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| Q |
272 |
gaggtgtatggatatatgggttttctttttcttttggtgttccgccaatatacgagcgccctttg |
336 |
Q |
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| T |
7335118 |
gaggtgtatggatatatgggttttctttttcttttggtgttccgccaatatacgagcgccctttg |
7335054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 14 - 137
Target Start/End: Complemental strand, 7335362 - 7335243
Alignment:
| Q |
14 |
tattttcccttaatttccctctaagtagtgagtttatagaggttttggatagctgtttggaatttggttatgtggtcatttgcaatggagtttgacattt |
113 |
Q |
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| T |
7335362 |
tattttcccttaatttccctctaagtagtgaaattt----ggttatgaatagctgtttggaatttggttatgtggtcatttgcaatagagtttgacattt |
7335267 |
T |
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| Q |
114 |
ttgttgaagattggtttctgctgt |
137 |
Q |
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| T |
7335266 |
ttgttgaagattggtttctgctgt |
7335243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 2764333 - 2764378
Alignment:
| Q |
236 |
ggttgggtggtgtctttattggtgtttttgatatacgaggtgtatg |
281 |
Q |
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| T |
2764333 |
ggttgggtggtgactttattggtgtttttaatatccgagatgtatg |
2764378 |
T |
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