View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_45 (Length: 312)
Name: NF3162_high_45
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_45 |
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Alignment Details
Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 19 - 275
Target Start/End: Complemental strand, 42086668 - 42086412
Alignment:
| Q |
19 |
gatttgataggtagagaattatgatagcctctctcaattcatttgtttagagatttggaagaagaaggaataatgtgaaaatttctctgttttgtgcaat |
118 |
Q |
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| T |
42086668 |
gatttgataggtagagaattatgatagcctctctcaattcatttgtttagagatttggaagaagaaggaataatgtgaaaatttctctgttttgtgcaat |
42086569 |
T |
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| Q |
119 |
gcacacgcttgcatgccttttccatccatttgcttgtgtcagtgtgatgtattttaccatttctagttttataactttagctaccaccttgttaatttgt |
218 |
Q |
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| T |
42086568 |
gcacacgcttgcatgccttttccattcatttgcttgtgtcagtgtgatgtgttttaccatttctagttttataactttagctaccaccttgttaatttgt |
42086469 |
T |
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| Q |
219 |
atgaccattgtaacatatatatgacttggactcacacataacaaaggggcaaaataa |
275 |
Q |
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| T |
42086468 |
atgaccattgtaacatatatatgacttggactcacacataacataggtgcaaaataa |
42086412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 16512588 - 16512622
Alignment:
| Q |
270 |
aaataattagactattacttttcccaccctatgct |
304 |
Q |
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| T |
16512588 |
aaataataagactattacttttcccaccctatgct |
16512622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 23348336 - 23348364
Alignment:
| Q |
275 |
attagactattacttttcccaccctatgc |
303 |
Q |
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| T |
23348336 |
attagactattacttttcccaccctatgc |
23348364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 274 - 302
Target Start/End: Complemental strand, 29823313 - 29823285
Alignment:
| Q |
274 |
aattagactattacttttcccaccctatg |
302 |
Q |
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| T |
29823313 |
aattagactattacttttcccaccctatg |
29823285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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