View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_high_5 (Length: 574)

Name: NF3162_high_5
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_high_5
NF3162_high_5
[»] chr3 (3 HSPs)
chr3 (152-568)||(30261048-30261463)
chr3 (19-150)||(30260518-30260649)
chr3 (525-563)||(8769375-8769413)
[»] chr6 (1 HSPs)
chr6 (525-568)||(29444187-29444230)
[»] chr5 (2 HSPs)
chr5 (525-556)||(5147413-5147444)
chr5 (525-568)||(15898625-15898668)
[»] chr2 (2 HSPs)
chr2 (525-568)||(37528988-37529031)
chr2 (521-553)||(36748310-36748342)
[»] chr4 (2 HSPs)
chr4 (525-563)||(5499349-5499387)
chr4 (414-447)||(35594674-35594707)
[»] chr1 (3 HSPs)
chr1 (525-563)||(25983551-25983589)
chr1 (525-563)||(35622671-35622709)
chr1 (525-558)||(24131318-24131351)
[»] chr7 (1 HSPs)
chr7 (519-568)||(37264459-37264508)


Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 152 - 568
Target Start/End: Original strand, 30261048 - 30261463
Alignment:
Q  152 aatgggttagttttgcacaaggaatcatattaaggaatgattagtatcccgtgcttatgagtgaatacagtagcaatcttgtcaggttggatcatacact 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30261048 aatgggttagttttgcacaaggaatcatattaaggaatgattagtatcccgtgcttatgagtgaatacagtagcaatcttgtcaggttggatcatacact 30261147  T
Q  252 acatacgagtgaa-tactataccatgcttgacaagggtcaattacattagtaaccatataaaggaaagaactgaattgttcagtaccaaacaaaggtgat 350  Q
    | ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||    
T  30261148 atatacgagtgaaatactatcccatgcttgacaagggtcaattacattagtaaccatataaaggaaagaactaaattgttcagtaccaaataaaggtgat 30261247  T
Q  351 ttgaagatcacagtccacaaaccacttccaattcactgcaatcattttttaaaacgcacagaggatacaaagattatgatctcatatagtaaacacagca 450  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  30261248 ttgaagatcacagtccacagaccacttccaattcactgcaatcattttttaaaacgca--gaggatacaaagattatgatctcatatagtaaacacagca 30261345  T
Q  451 ccatactagaaagagagggtactcatgacaaccgacaatgaccaatgttatcaaacagttgtactcttgttaactactccctccgtcccattttaactga 550  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30261346 ccatactagaaagagagggtactcatgacaaccgacaatgaccaatgttatcaaacagttgtactcttgttaactactccctccgtcccattttaactga 30261445  T
Q  551 gtcttttgttcatctcac 568  Q
    | ||||||||||| ||||    
T  30261446 gccttttgttcatttcac 30261463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 30260518 - 30260649
Alignment:
Q  19 tacaccatacaccttaagcatgctctgcaatcgaaaccataagagcacttcatccaggatgccaaacaatgaataacatgataacctcatgttggtttga 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30260518 tacaccatacaccttaagcatgctctgcaatcgaaaccataagagcacttcatccaggatgccaaacaatgaataacatgataacctcatgttggtttga 30260617  T
Q  119 cccgggtaatgacacaatatataggtcaatac 150  Q
    | ||||||||||||| ||||||||||||||||    
T  30260618 cacgggtaatgacactatatataggtcaatac 30260649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 525 - 563
Target Start/End: Complemental strand, 8769413 - 8769375
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttttgttcat 563  Q
    |||||| ||||||||||||||||||||| ||||||||||    
T  8769413 tactccttccgtcccattttaactgagttttttgttcat 8769375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 568
Target Start/End: Complemental strand, 29444230 - 29444187
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttttgttcatctcac 568  Q
    |||||||||||| |||| ||||||||||||||||||||| ||||    
T  29444230 tactccctccgttccatattaactgagtcttttgttcatttcac 29444187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 556
Target Start/End: Original strand, 5147413 - 5147444
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttt 556  Q
    ||||||||||||||||||||||||||||||||    
T  5147413 tactccctccgtcccattttaactgagtcttt 5147444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 568
Target Start/End: Complemental strand, 15898668 - 15898625
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttttgttcatctcac 568  Q
    |||||||||||||||||||||| ||||||||| |||||| ||||    
T  15898668 tactccctccgtcccattttaaatgagtctttagttcatttcac 15898625  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 525 - 568
Target Start/End: Original strand, 37528988 - 37529031
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttttgttcatctcac 568  Q
    |||||||||||||||| |||||||||||| ||||||||| ||||    
T  37528988 tactccctccgtcccaatttaactgagtcatttgttcatttcac 37529031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 521 - 553
Target Start/End: Complemental strand, 36748342 - 36748310
Alignment:
Q  521 taactactccctccgtcccattttaactgagtc 553  Q
    |||||||||||||||||||| ||||||||||||    
T  36748342 taactactccctccgtcccagtttaactgagtc 36748310  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 5499349 - 5499387
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttttgttcat 563  Q
    ||||||||||||||||||||||| ||| |||||||||||    
T  5499349 tactccctccgtcccattttaaccgagccttttgttcat 5499387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 414 - 447
Target Start/End: Complemental strand, 35594707 - 35594674
Alignment:
Q  414 gatacaaagattatgatctcatatagtaaacaca 447  Q
    |||||||||||||| |||||||||||||||||||    
T  35594707 gatacaaagattataatctcatatagtaaacaca 35594674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 25983551 - 25983589
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttttgttcat 563  Q
    ||||| ||||||| |||||||||||||||||||||||||    
T  25983551 tactctctccgtctcattttaactgagtcttttgttcat 25983589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 525 - 563
Target Start/End: Original strand, 35622671 - 35622709
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttttgttcat 563  Q
    |||||||||||| ||||||||||| ||||||||||||||    
T  35622671 tactccctccgttccattttaactaagtcttttgttcat 35622709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 525 - 558
Target Start/End: Original strand, 24131318 - 24131351
Alignment:
Q  525 tactccctccgtcccattttaactgagtcttttg 558  Q
    ||||||||||||||||||||||||||||| ||||    
T  24131318 tactccctccgtcccattttaactgagtcatttg 24131351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 519 - 568
Target Start/End: Complemental strand, 37264508 - 37264459
Alignment:
Q  519 gttaactactccctccgtcccattttaactgagtcttttgttcatctcac 568  Q
    ||||| |||||||||||||||||||||| |||| |||||| |||| ||||    
T  37264508 gttaattactccctccgtcccattttaagtgagccttttgctcatttcac 37264459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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