View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3162_high_51 (Length: 292)
Name: NF3162_high_51
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_51 |
 | |
|
| [»] scaffold0090 (1 HSPs) |
| | |
|
| [»] scaffold0025 (1 HSPs) |
| | |
|
| [»] scaffold0499 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 18 - 281
Target Start/End: Complemental strand, 2996697 - 2996434
Alignment:
| Q |
18 |
catatacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatg |
117 |
Q |
| |
|
||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2996697 |
catatacttaaaaagatacttgatggagttagacttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatg |
2996598 |
T |
|
| Q |
118 |
acaaaacgattatccaatttaacaccttatttctcaacatgtataccaaaattgtgacatttatatatgggttatctaggagactagttctagtcaatat |
217 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2996597 |
acaaaacgattatccaatttaacaccctatttctcaacatgtataccaaaattgtgacatttatatatgggttatctaggagactagttctagtcaatat |
2996498 |
T |
|
| Q |
218 |
ataagcgaacacatacaannnnnnncatgtagatagatgagattaaagactttgtatctttctt |
281 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2996497 |
ataagcgaacacagacaatttttttcatgtagatagatgagattaaagactttgtatctttctt |
2996434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 8426247 - 8426140
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
8426247 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
8426148 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
8426147 |
tatccaat |
8426140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 169
Target Start/End: Complemental strand, 45120491 - 45120350
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||| ||| | ||| ||||| |||| ||||| | |||||| |||||||||||| |||| |||||| |
|
|
| T |
45120491 |
aaaaggtacttgatggagttggatttgttacaatattccacatttacatgacctccatatctaatgagaagatgcggattgtatgagacgacataacgat |
45120392 |
T |
|
| Q |
128 |
tatccaatttaacaccttatttctcaacatgtataccaaaat |
169 |
Q |
| |
|
||||||||| || || | || ||||||||||| ||||||| |
|
|
| T |
45120391 |
tatccaattggaccccctgcttgtcaacatgtatcccaaaat |
45120350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 8996960 - 8996852
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
8996960 |
aaaaggtacttgatggagttgaatttgttacaatattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatagcgat |
8996861 |
T |
|
| Q |
128 |
tatccaatt |
136 |
Q |
| |
|
||||||||| |
|
|
| T |
8996860 |
tatccaatt |
8996852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 12778808 - 12778701
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
12778808 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
12778709 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
12778708 |
tatccaat |
12778701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 12783667 - 12783560
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
12783667 |
aaaaggtacttgatggagttggatttgttacaacattacacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
12783568 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
12783567 |
tatccaat |
12783560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 4103239 - 4103347
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||| ||| | | | ||||| | || ||||| | ||||||| ||||||||| || ||| | |||| |
|
|
| T |
4103239 |
aaaaggtacttgatggagttggatttgttacaatattccacttttaaatgacctccgtatctaatgagaagatgtggattgtatgggacaacatatcgat |
4103338 |
T |
|
| Q |
128 |
tatccaatt |
136 |
Q |
| |
|
||||||||| |
|
|
| T |
4103339 |
tatccaatt |
4103347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 7824047 - 7824154
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||||| || ||||| | ||||||| ||||||||| ||||||| | |||| |
|
|
| T |
7824047 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgaccttcgtatctaatgagaagatgtggattgtatgggatgacatatcgat |
7824146 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
7824147 |
tatccaat |
7824154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 25212474 - 25212367
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
25212474 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
25212375 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
25212374 |
tatccaat |
25212367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 25216225 - 25216118
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
25216225 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
25216126 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
25216125 |
tatccaat |
25216118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 169
Target Start/End: Original strand, 21397568 - 21397709
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||||||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
21397568 |
aaaaggtacttgatggagttggatttgttacaatattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatagcgat |
21397667 |
T |
|
| Q |
128 |
tatccaatttaacaccttatttctcaacatgtataccaaaat |
169 |
Q |
| |
|
||||||||| || || | || ||||||||||| ||||||| |
|
|
| T |
21397668 |
tatccaattggaccccctgcttgtcaacatgtatcccaaaat |
21397709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 41917852 - 41917745
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| |||||||||||| |||| | |||| |
|
|
| T |
41917852 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgagacgacatatcgat |
41917753 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
41917752 |
tatccaat |
41917745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 28663881 - 28663774
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
28663881 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
28663782 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
28663781 |
tatccaat |
28663774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 37822715 - 37822608
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
37822715 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
37822616 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
37822615 |
tatccaat |
37822608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0090 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0090
Description:
Target: scaffold0090; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 46645 - 46538
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
46645 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
46546 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
46545 |
tatccaat |
46538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Original strand, 35858466 - 35858573
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
35858466 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
35858565 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
35858566 |
tatccaat |
35858573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 135
Target Start/End: Complemental strand, 49784537 - 49784430
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgacaaaacgat |
127 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| ||||| | || ||||| | ||||||| ||||||||| || |||| | |||| |
|
|
| T |
49784537 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgacctccgtatctaatgagaagatgtggattgtatgggacgacatatcgat |
49784438 |
T |
|
| Q |
128 |
tatccaat |
135 |
Q |
| |
|
|||||||| |
|
|
| T |
49784437 |
tatccaat |
49784430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0025 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0025
Description:
Target: scaffold0025; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 131
Target Start/End: Original strand, 18230 - 18339
Alignment:
| Q |
21 |
atacttaaaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggaccttcataactaatcataagatgttgattgtatgagatgaca |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||| | | ||||| || | ||| | ||| ||| || ||||||||||||||| ||| ||||||||| | |
|
|
| T |
18230 |
atacttaaaaaggtacttgatggagttagacttg-ttcgatattccatgttaagatgacattcttacctaatcataagatgtgtattatatgagatgtga |
18328 |
T |
|
| Q |
121 |
aaacgattatc |
131 |
Q |
| |
|
|||||| |||| |
|
|
| T |
18329 |
aaacgactatc |
18339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0499 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0499
Description:
Target: scaffold0499; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 12242 - 12351
Alignment:
| Q |
28 |
aaaaggtatttgatggagttagatttgatacaatatttcacgctaacaggacctt-cataactaatcataagatgttgattgtatgagatgacaaaacga |
126 |
Q |
| |
|
|||||||| ||||||||||| |||||| ||||| ||| ||| | ||| |||||| | || ||||| | ||||||| ||||||||| || |||| | ||| |
|
|
| T |
12242 |
aaaaggtacttgatggagttggatttgttacaacattccacatttacatgaccttccgtatctaatgagaagatgtggattgtatgggacgacatatcga |
12341 |
T |
|
| Q |
127 |
ttatccaatt |
136 |
Q |
| |
|
|||||||||| |
|
|
| T |
12342 |
ttatccaatt |
12351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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