View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3162_high_56 (Length: 283)

Name: NF3162_high_56
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3162_high_56
NF3162_high_56
[»] chr7 (11 HSPs)
chr7 (83-219)||(3693200-3693334)
chr7 (82-183)||(3685518-3685619)
chr7 (82-219)||(3702975-3703107)
chr7 (34-124)||(3651479-3651569)
chr7 (216-283)||(3685914-3685981)
chr7 (97-215)||(3700673-3700793)
chr7 (85-185)||(3705909-3706012)
chr7 (82-145)||(3694967-3695027)
chr7 (33-80)||(3700509-3700556)
chr7 (239-283)||(3675510-3675554)
chr7 (216-256)||(3693681-3693721)
[»] chr4 (1 HSPs)
chr4 (181-212)||(1287426-1287457)


Alignment Details
Target: chr7 (Bit Score: 106; Significance: 4e-53; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 83 - 219
Target Start/End: Original strand, 3693200 - 3693334
Alignment:
Q  83 tgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaaa 182  Q
    |||||||||||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  3693200 tgattaattgtagcaacagtttatgtaacttttaataatgtctt--aaattatgtttattggaatattatttagattatgctatttttacgcataccaaa 3693297  T
Q  183 aaggttattcttattttaattgaattatagattatat 219  Q
    ||||||||||||||||||||||||||||||| |||||    
T  3693298 aaggttattcttattttaattgaattatagagtatat 3693334  T

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Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 82 - 183
Target Start/End: Original strand, 3685518 - 3685619
Alignment:
Q  82 atgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaa 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3685518 atgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaa 3685617  T
Q  182 aa 183  Q
    ||    
T  3685618 aa 3685619  T

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Target: chr7; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 82 - 219
Target Start/End: Original strand, 3702975 - 3703107
Alignment:
Q  82 atgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattatttagattattctatttttatgcataccaa 181  Q
    |||||||||||| ||||||||||||||||||||||||||||||||  |||||||||||||||| |||||   ||||||||||||||||||||||||||||    
T  3702975 atgattaattgtggcaacagtttatgtaacttttaataatgtctc--aaattctgtttattgggatatt---tagattattctatttttatgcataccaa 3703069  T
Q  182 aaaggttattcttattttaattgaattatagattatat 219  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  3703070 aaaggttattcttattttaattgaattatagataatat 3703107  T

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Target: chr7; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 34 - 124
Target Start/End: Complemental strand, 3651569 - 3651479
Alignment:
Q  34 cagagccatctttcaaccctaggtgatccccagtttggaagacatctaatgattaattgtagcaacagtttatgtaacttttaataatgtc 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3651569 cagagccatctttcaaccctaggtgatccccagtttggaagacatctaatgattaattgtagcaacagtttatgtaacttttaataatgtc 3651479  T

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Target: chr7; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 216 - 283
Target Start/End: Original strand, 3685914 - 3685981
Alignment:
Q  216 atataagatgagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgc 283  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3685914 atataagaggagagggccgaaaataaaggataatgatatttgcatcgaagaatatagatcacgaacgc 3685981  T

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Target: chr7; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 3700673 - 3700793
Alignment:
Q  97 aacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatatt-atttagatta-----ttctatttttatgcataccaaaaaggttat 190  Q
    |||||||||||||||||||  |||||||||  ||||| |||||||||||||||| ||||||||||     ||||||||||||| ||||||| ||||||||    
T  3700673 aacagtttatgtaactttt--taatgtctc--aaattatgtttattggaatatttatttagattaaactattctatttttatgtataccaataaggttat 3700768  T
Q  191 tcttattttaattgaattatagatt 215  Q
    |||||||||||||||||||||||||    
T  3700769 tcttattttaattgaattatagatt 3700793  T

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Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 85 - 185
Target Start/End: Original strand, 3705909 - 3706012
Alignment:
Q  85 attaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattggaatattat-----ttagattattctatttttatgcatacc 179  Q
    ||||||||||||||||||||||||||||||||||||||  |||||| |||||||||||||||| ||||     ||||||||||||||||| ||| |||||    
T  3705909 attaattgtagcaacagtttatgtaacttttaataatg--tctcaacttctgtttattggaatgttatttagattagattattctattttcatgtatacc 3706006  T
Q  180 aaaaag 185  Q
    ||||||    
T  3706007 aaaaag 3706012  T

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Target: chr7; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 82 - 145
Target Start/End: Original strand, 3694967 - 3695027
Alignment:
Q  82 atgattaattgtagcaacagtttatgtaacttttaataatgtctctcaaattctgtttattgga 145  Q
    |||||||||||||||||||||||||||||||||||||||||||||   || |||||||||||||    
T  3694967 atgattaattgtagcaacagtttatgtaacttttaataatgtctc---aaatctgtttattgga 3695027  T

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Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 80
Target Start/End: Original strand, 3700509 - 3700556
Alignment:
Q  33 tcagagccatctttcaaccctaggtgatccccagtttggaagacatct 80  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||    
T  3700509 tcagagtcatcttttaaccctaggtgatccccagtttggaagacatct 3700556  T

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Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 239 - 283
Target Start/End: Original strand, 3675510 - 3675554
Alignment:
Q  239 taaaggataatgatatttgcatcgaagaatatagatcacgaacgc 283  Q
    |||||| |||||||||||| | |||||||||||||||||||||||    
T  3675510 taaaggttaatgatatttgtagcgaagaatatagatcacgaacgc 3675554  T

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Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 256
Target Start/End: Original strand, 3693681 - 3693721
Alignment:
Q  216 atataagatgagagggccgaaaataaaggataatgatattt 256  Q
    |||||||| | ||||||||||| ||||||||||||||||||    
T  3693681 atataagacgcgagggccgaaattaaaggataatgatattt 3693721  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 212
Target Start/End: Complemental strand, 1287457 - 1287426
Alignment:
Q  181 aaaaggttattcttattttaattgaattatag 212  Q
    ||||||||||||||||||||||||||||||||    
T  1287457 aaaaggttattcttattttaattgaattatag 1287426  T

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