View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3162_high_60 (Length: 280)
Name: NF3162_high_60
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_60 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 34201825 - 34201552
Alignment:
| Q |
1 |
tctccaacatcaaagatggaatcagcttacacagttcttcaagcatggaaatctgcaatcactgatgaccctttaaagatactagattcttggaatggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34201825 |
tctccaacatcaaagatggaatcagcttacacagttcttcaagcatggaaatctgcaatcactgatgaccctttaaagatactagattcttggaatggtt |
34201726 |
T |
|
| Q |
101 |
caaatgtatgttcatataaaggaatcttctgtgcaaatcctgaaaatggaataacttctacaacagcttctacttcagtagttcttgctggaatagatct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34201725 |
caaatgtatgttcatataaaggaatcttctgtgcaaatcctgaaaatggaataacttctacaacagcttctacttcagtagttcttgctggaatagatct |
34201626 |
T |
|
| Q |
201 |
aaaccatgcaaaccttgaaggaacacttgtacaagaattatcattactcactgatatgtcattacttcatctca |
274 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34201625 |
aaaccatgcaaaccttgaaggaacacttgtacaagaattatcattactcactgatatgtcattacttcatctca |
34201552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 36 - 133
Target Start/End: Original strand, 43029966 - 43030063
Alignment:
| Q |
36 |
tcttcaagcatggaaatctgcaatcactgatgaccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtg |
133 |
Q |
| |
|
||||||||| ||||||||| ||||||||||||||||||||||||| ||||| | ||| |||| | ||||| ||||| |||||||||||||| |||| |
|
|
| T |
43029966 |
tcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttcttataaaggaatcttttgtg |
43030063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University