View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_67 (Length: 257)
Name: NF3162_high_67
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_67 |
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| [»] scaffold0019 (2 HSPs) |
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Alignment Details
Target: scaffold0019 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 179086 - 179323
Alignment:
| Q |
13 |
cagactacacaacacagtgaaggggaacacacggaaaaccaaacagatgtcacaccaggaaggaacaaaaatgtagcagcaaccgctacaatctatgcaa |
112 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
179086 |
cagactacacagcacagtgaaggggaacacacgaaaaaccaaaccgatgccacaccaggaaggaacaaaaatgtagcagcaaccgctgcaatctatgcaa |
179185 |
T |
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| Q |
113 |
aacaggggccaga------cnnnnnnnnnnngatagcagatggacagcaggcacgtccaacaaccacaacataagaacactccattgacaatcttccccc |
206 |
Q |
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||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||| |
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| T |
179186 |
aacaggggccagacaacagcaaaaaaaaaaagatagcagatggacagcaggcacgtccaacaaccacaacataagaacactctattggcaatcttccccc |
179285 |
T |
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| Q |
207 |
-aacttaaggtacaccataagaaagaagttgataactg |
243 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
179286 |
aaacttaaggtacaccataagaaagaagttgataactg |
179323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 243
Target Start/End: Original strand, 150246 - 150485
Alignment:
| Q |
13 |
cagactacacaacacagtgaaggggaacacacggaaaaccaaacagatgtcacaccaggaaggaacaaaaatgtagcagcaaccgctacaatctatgcaa |
112 |
Q |
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||||||||||| ||||| ||||||||| ||||| |||||||||| |||| |||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
150246 |
cagactacacagcacagggaaggggaatacacgaaaaaccaaaccgatgccacaccaggaaggaacaaaaatgtagcagcaaccactgcaatctatgcaa |
150345 |
T |
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| Q |
113 |
aacaggggccagacnnnnnnnnnnn--------gatagcagatggacagcaggcacgtccaacaaccacaacataagaacactccattgacaatcttccc |
204 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
150346 |
aacaggggccagacaacagcaaaaaaaaaaaaagatagcagatggacagcagacacgtccaacaaccacaacataagaacactccattggcaatcttccc |
150445 |
T |
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| Q |
205 |
cc-aacttaaggtacaccataagaaagaagttgataactg |
243 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| |
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| T |
150446 |
ccaaacttaaggtacaccataagaaagaagttgataactg |
150485 |
T |
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