View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3162_high_75 (Length: 246)
Name: NF3162_high_75
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_75 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41066340 - 41066109
Alignment:
| Q |
1 |
atatattgaagatccttatggaggttcatcctgaattgtcaatgacagtggatccatcaaacacaacagctttgcatacagctgcaacacaaggacatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41066340 |
atatattgaagatccttatggaggttcatcctgaattgtcaatgacagtggatccatcaaacacaacagctttgcatacagctgcaacacaaggacatat |
41066241 |
T |
|
| Q |
101 |
tgagatagtgaaattcctattggaagcaggaagtagtttggcaaccattgctaaaagtaacgggaaaacggctcttcattctgctgcaagaaatggacat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41066240 |
tgagatagtgaaattcctattggaagcaggaagtagtttggcaaccattgctaaaagtaacgggaaaacggctcttcattctgctgcaagaaatggacat |
41066141 |
T |
|
| Q |
201 |
tcggaggttgtgaaagcacttcttgagaaaga |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
41066140 |
tcggaggttgtgaaagcacttcttgagaaaga |
41066109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 9 - 229
Target Start/End: Complemental strand, 23033361 - 23033141
Alignment:
| Q |
9 |
aagatccttatggaggttcatcctgaattgtcaatgacagtggatccatcaaacacaacagctttgcatacagctgcaacacaaggacatattgagatag |
108 |
Q |
| |
|
|||||||| ||||| | |||| |||||||||||||||| ||||||||||| ||||| || || || || |||||||||||||||||||||| |||||||| |
|
|
| T |
23033361 |
aagatcctaatggaagctcattctgaattgtcaatgactgtggatccatccaacaccaccgccttacacacagctgcaacacaaggacatactgagatag |
23033262 |
T |
|
| Q |
109 |
tgaaattcctattggaagcaggaagtagtttggcaaccattgctaaaagtaacgggaaaacggctcttcattctgctgcaagaaatggacattcggaggt |
208 |
Q |
| |
|
|||||| ||||| |||||||| ||||| ||||| || ||||||| |||||| || ||||| ||| | ||||||||||||||||||||||| | |||||| |
|
|
| T |
23033261 |
tgaaatatctattagaagcaggtagtagcttggctacaattgctagaagtaatggtaaaacagctttgcattctgctgcaagaaatggacacttggaggt |
23033162 |
T |
|
| Q |
209 |
tgtgaaagcacttcttgagaa |
229 |
Q |
| |
|
||||||||| |||||||||| |
|
|
| T |
23033161 |
tgtgaaagcgattcttgagaa |
23033141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University