View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3162_high_77 (Length: 244)
Name: NF3162_high_77
Description: NF3162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3162_high_77 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 4384475 - 4384249
Alignment:
| Q |
1 |
cttttggaatcatttcctgaatctatgtacaacttatacaacaacattaatcaagaacttttcagttttattaaaaacacttaattccaagtgtaatagg |
100 |
Q |
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| T |
4384475 |
cttttggaatcatttcctgaatctatgtacaacttatacaacaaaattaatcaagaacttttcagttttattaaaaacacttaattccaagtgtaatagg |
4384376 |
T |
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| Q |
101 |
agagtacatgtcctaatcatttgctgcactagttgtagtcaataggaataggaaccttgcttatgagagcatgcatattggaattcaatccagtctcaat |
200 |
Q |
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| T |
4384375 |
agagtacatgtcctaatcatttgctgcactagttgtagtcaataggaataggaaccttgcttatgagagcatgcatattggaattcaatccaggctcaat |
4384276 |
T |
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| Q |
201 |
ttctattggttttctgttgtctatcat |
227 |
Q |
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| T |
4384275 |
ttctattggttttctgttgtctatcat |
4384249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 94 - 189
Target Start/End: Original strand, 35546487 - 35546582
Alignment:
| Q |
94 |
taataggagagtacatgtcctaatcatttgctgcactagttgtagtcaataggaataggaaccttgcttatgagagcatgcatattggaattcaat |
189 |
Q |
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| T |
35546487 |
taataggagagtacatgtcctgatcatttgccgcactagttgttgtaaataggagtatgaaccttgcttatgagagcataaatattggaattcaat |
35546582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 34689484 - 34689537
Alignment:
| Q |
24 |
tatgtacaacttatacaacaacattaatcaagaacttttcagttttattaaaaa |
77 |
Q |
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| T |
34689484 |
tatgtacaacctatacgacaaaactaatcaagaacttttcagttttattgaaaa |
34689537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 34711896 - 34711949
Alignment:
| Q |
24 |
tatgtacaacttatacaacaacattaatcaagaacttttcagttttattaaaaa |
77 |
Q |
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|||||||||| ||||| |||| | ||||||||||||||||||||||||| |||| |
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| T |
34711896 |
tatgtacaacctatacgacaaaactaatcaagaacttttcagttttattgaaaa |
34711949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 139 - 208
Target Start/End: Complemental strand, 46520378 - 46520309
Alignment:
| Q |
139 |
tcaataggaataggaaccttgcttatgagagcatgcatattggaattcaatccagtctcaatttctattg |
208 |
Q |
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| T |
46520378 |
tcaataggaatagcaaccttgcttatgagagcaggtatattcgaattcgacccaatgtcaatttccattg |
46520309 |
T |
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